UHGV-1500711

Genome information

Genome length 33,297 bps

CDS count 35

Completeness 72.43% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1500711
vOTU ID	vOTU-036035
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229903
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.57
Jumbo phage	No

Genome content
Genome length	33,297 bps
GC content	52.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.49%
Average CDS length	901.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1500711_1	PHROG	phrog_6721	NA	unknown function
UHGV-1500711_1	UniRef90	UniRef90_UPI001D0A5CC3	HNH endonuclease	NA
UHGV-1500711_1	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-1500711_1	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1500711_1	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1500711_1	Structural annotation	PF02796, PF07463, TIGR02170	NA	NA
UHGV-1500711_3	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-1500711_3	UniRef90	UniRef90_R7QWE6	HTH_30 domain-containing protein	NA
UHGV-1500711_3	eggNOG-mapper	1280685.AUKC01000019_gene338	PucR C-terminal helix-turn-helix domain	NA
UHGV-1500711_3	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-1500711_3	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-1500711_3	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-1500711_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1500711_4	UniRef90	UniRef90_UPI00050FC2D1	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-1500711_4	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-1500711_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1500711_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1500711_4	Structural annotation	PF13392, PF20987	NA	NA
UHGV-1500711_5	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1500711_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1500711_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1500711_6	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-1500711_6	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-1500711_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1500711_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1500711_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1500711_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1500711_7	PHROG	phrog_10250	NA	unknown function
UHGV-1500711_7	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-1500711_7	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1500711_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1500711_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1500711_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-1500711_7	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1500711_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-1500711_8	UniRef90	UniRef90_A0A2Z4QBJ4	Portal protein	NA
UHGV-1500711_8	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-1500711_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1500711_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1500711_9	UniRef90	UniRef90_U2SBR7	Ntox50 domain-containing protein	NA
UHGV-1500711_9	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1500711_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1500711_9	COG	COG2369	NA	NA
UHGV-1500711_9	Structural annotation	PF06152	NA	NA
UHGV-1500711_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1500711_12	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1500711_12	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1500711_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1500711_12	Structural annotation	PF06810	NA	NA
UHGV-1500711_13	PHROG	phrog_909	major head protein	head and packaging
UHGV-1500711_13	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1500711_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1500711_14	UniRef90	UniRef90_UPI000CDB6260	major capsid protein	NA
UHGV-1500711_14	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1500711_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1500711_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1500711_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1500711_15	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1500711_16	PHROG	phrog_3366	NA	unknown function
UHGV-1500711_16	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-1500711_16	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1500711_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1500711_17	UniRef90	UniRef90_UPI00137AF39D	minor capsid protein	NA
UHGV-1500711_17	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1500711_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1500711_17	Structural annotation	PF11114	NA	NA
UHGV-1500711_18	PHROG	phrog_3266	tail completion	connector
UHGV-1500711_18	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1500711_18	Structural annotation	PF12691	NA	NA
UHGV-1500711_19	PHROG	phrog_820	major tail protein	tail
UHGV-1500711_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-1500711_19	eggNOG-mapper	663278.Ethha_0099	NA	NA
UHGV-1500711_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1500711_20	PHROG	phrog_4450	NA	unknown function
UHGV-1500711_20	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-1500711_20	Pfam	PF20378	NA	DUF6673
UHGV-1500711_20	Structural annotation	PF20378	NA	NA
UHGV-1500711_21	PHROG	phrog_706	NA	unknown function
UHGV-1500711_21	UniRef90	UniRef90_UPI0013DE0285	Gp15 family bacteriophage protein	NA
UHGV-1500711_21	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-1500711_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1500711_21	Structural annotation	PF06854	NA	NA
UHGV-1500711_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1500711_22	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-1500711_22	COG	COG5412	Phage-related protein	NA
UHGV-1500711_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1500711_24	PHROG	phrog_13879	NA	unknown function
UHGV-1500711_24	eggNOG-mapper	1203606.HMPREF1526_00968	NA	NA
UHGV-1500711_24	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1500711_25	PHROG	phrog_18725	NA	unknown function
UHGV-1500711_25	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1500711_27	eggNOG-mapper	189425.PGRAT_24000	NA	NA
UHGV-1500711_28	PHROG	phrog_1382	NA	unknown function
UHGV-1500711_28	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-1500711_29	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-1500711_32	PHROG	phrog_21483	NA	unknown function
UHGV-1500711_32	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-1500711_33	UniRef90	UniRef90_A0A318L9Z0	MuF_C domain-containing protein	NA
UHGV-1500711_33	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1500711_33	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1500711_35	PHROG	phrog_6721	NA	unknown function
UHGV-1500711_35	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-1500711_35	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA