UHGV-1500858

Genome information

Genome length 33,199 bps

CDS count 46

Completeness 93.07% (high-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-1500858
vOTU ID	vOTU-072571
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229374
BioSample	SAMEA2150168
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.07% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.69
Jumbo phage	No

Genome content
Genome length	33,199 bps
GC content	51.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.20%
Average CDS length	645.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1500858_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1500858_3	PHROG	phrog_435	endolysin	lysis
UHGV-1500858_3	UniRef90	UniRef90_A0A174BQ54	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500858_3	eggNOG-mapper	679935.Alfi_2718	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500858_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1500858_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500858_3	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-1500858_4	UniRef90	UniRef90_UPI001CC36B3C	NA	NA
UHGV-1500858_4	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-1500858_4	Structural annotation	PF11195	NA	NA
UHGV-1500858_5	Structural annotation	PF20647	NA	NA
UHGV-1500858_6	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1500858_6	PHROG	phrog_1	integrase	integration and excision
UHGV-1500858_6	UniRef90	UniRef90_A0A4Y1WR36	Transposase	NA
UHGV-1500858_6	eggNOG-mapper	997884.HMPREF1068_03093	Belongs to the 'phage' integrase family	NA
UHGV-1500858_6	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1500858_6	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1500858_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1500858_7	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-1500858_7	UniRef90	UniRef90_UPI0002DCEF74	ORF6N domain-containing protein	NA
UHGV-1500858_7	eggNOG-mapper	679935.Alfi_0227	PFAM ORF6N domain	NA
UHGV-1500858_7	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1500858_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1500858_7	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-1500858_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1500858_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1500858_10	UniRef90	UniRef90_A0A4Y1WPK9	Peptidase_S24 domain-containing protein	NA
UHGV-1500858_10	eggNOG-mapper	1121896.JMLU01000008_gene1790	Peptidase S24-like	NA
UHGV-1500858_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1500858_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1500858_10	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1500858_11	UniRef90	UniRef90_A0A4P8LL40	Trypco2 domain-containing protein	NA
UHGV-1500858_11	eggNOG-mapper	1236542.BALM01000015_gene1067	NA	NA
UHGV-1500858_11	Structural annotation	PF19631	NA	NA
UHGV-1500858_13	Structural annotation	PF11112	NA	NA
UHGV-1500858_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1500858_14	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-1500858_14	UniRef90	UniRef90_UPI001BA4768D	N-6 DNA methylase	NA
UHGV-1500858_14	eggNOG-mapper	411476.BACOVA_03912	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-1500858_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1500858_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1500858_15	KOfam	K14059	int; integrase	NA
UHGV-1500858_15	PHROG	phrog_1	integrase	integration and excision
UHGV-1500858_15	UniRef90	UniRef90_A0A1Q6GQP6	Tyr recombinase domain-containing protein	NA
UHGV-1500858_15	eggNOG-mapper	1235788.C802_02111	Belongs to the 'phage' integrase family	NA
UHGV-1500858_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1500858_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1500858_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1500858_15	Structural annotation	PF00589, PF13102, MF_02055, NF040815, COG4974	NA	NA
UHGV-1500858_18	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-1500858_18	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-1500858_18	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-1500858_18	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1500858_18	Structural annotation	PF04383, NF033622	NA	NA
UHGV-1500858_20	PHROG	phrog_14584	NA	unknown function
UHGV-1500858_20	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-1500858_21	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-1500858_21	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1500858_21	UniRef90	UniRef90_UPI0009DAA602	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1500858_21	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-1500858_21	Pfam	PF12684	NA	DUF3799
UHGV-1500858_21	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1500858_22	PHROG	phrog_26490	NA	unknown function
UHGV-1500858_22	eggNOG-mapper	1268240.ATFI01000008_gene2557	NA	NA
UHGV-1500858_23	PHROG	phrog_16304	NA	unknown function
UHGV-1500858_23	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-1500858_23	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-1500858_23	Pfam	PF19808	NA	DUF6291
UHGV-1500858_24	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1500858_24	PHROG	phrog_31265	NA	unknown function
UHGV-1500858_24	UniRef90	UniRef90_UPI001898731D	pentapeptide repeat-containing protein	NA
UHGV-1500858_24	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-1500858_24	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1500858_24	Pfam	PF19062	NA	DUF5758
UHGV-1500858_24	COG	COG1357	NA	NA
UHGV-1500858_24	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-1500858_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1500858_25	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1500858_25	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-1500858_25	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1500858_25	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1500858_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1500858_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1500858_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1500858_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1500858_26	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1500858_26	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-1500858_26	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-1500858_26	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1500858_26	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-1500858_27	PHROG	phrog_874	NA	unknown function
UHGV-1500858_27	eggNOG-mapper	1236504.HMPREF2132_11385	NA	NA
UHGV-1500858_27	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1500858_28	PHROG	phrog_8684	NA	unknown function
UHGV-1500858_28	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-1500858_28	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-1500858_28	Pfam	PF09643	YopX protein	YopX
UHGV-1500858_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1500858_29	Structural annotation	NF011227	NA	NA
UHGV-1500858_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1500858_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1500858_30	UniRef90	UniRef90_UPI001E5043D4	site-specific DNA-methyltransferase	NA
UHGV-1500858_30	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1500858_30	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1500858_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1500858_30	COG	COG0863	DNA modification methylase	NA
UHGV-1500858_30	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1500858_32	Structural annotation	PF09035, NF040990	NA	NA
UHGV-1500858_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1500858_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1500858_33	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-1500858_33	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-1500858_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1500858_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1500858_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1500858_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1500858_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1500858_34	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-1500858_34	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-1500858_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1500858_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1500858_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-1500858_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1500858_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-1500858_35	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-1500858_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1500858_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1500858_36	KOfam	K06904	NA	NA
UHGV-1500858_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1500858_36	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-1500858_36	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-1500858_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1500858_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1500858_36	COG	COG3740	Phage head maturation protease	NA
UHGV-1500858_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1500858_37	UniRef90	UniRef90_A0A4Y1WQ08	Nucleoid-structuring protein H-NS	NA
UHGV-1500858_37	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-1500858_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1500858_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1500858_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1500858_37	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-1500858_39	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-1500858_43	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-1500858_44	PHROG	phrog_33698	NA	unknown function
UHGV-1500858_44	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-1500858_44	eggNOG-mapper	357276.EL88_08390	NA	NA
UHGV-1500858_44	Structural annotation	NF033848, COG4379	NA	NA
UHGV-1500858_45	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-1500858_45	Structural annotation	PF09629, MF_00749, TIGR00739, COG5475	NA	NA
UHGV-1500858_46	PHROG	phrog_14295	NA	unknown function
UHGV-1500858_46	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-1500858_46	COG	COG1196	Chromosome segregation ATPase Smc	NA