UHGV-1500877

Genome information

Genome length 35,927 bps

CDS count 52

Completeness 57.52% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1500877
vOTU ID	vOTU-025558
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0275346
BioSample	SAMEA1963786
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.33
Jumbo phage	No

Genome content
Genome length	35,927 bps
GC content	42.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.88%
Average CDS length	630.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1500877_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1500877_4	PHROG	phrog_435	endolysin	lysis
UHGV-1500877_4	UniRef90	UniRef90_A0A0J6WWA2	Cell wall hydrolase	NA
UHGV-1500877_4	eggNOG-mapper	1123250.KB908415_gene1421	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500877_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1500877_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500877_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1500877_5	PHROG	phrog_2143	NA	unknown function
UHGV-1500877_8	KOfam	K14059	int; integrase	NA
UHGV-1500877_8	PHROG	phrog_1	integrase	integration and excision
UHGV-1500877_8	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-1500877_8	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-1500877_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1500877_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1500877_8	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1500877_9	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1500877_9	eggNOG-mapper	1157490.EL26_01675	NA	NA
UHGV-1500877_9	Structural annotation	PF14301	NA	NA
UHGV-1500877_10	eggNOG-mapper	401526.TcarDRAFT_1289	Phage Tail Collar Domain	NA
UHGV-1500877_10	COG	COG4675	Phage tail collar domain	NA
UHGV-1500877_11	PHROG	phrog_587	structural protein	head and packaging
UHGV-1500877_11	UniRef90	UniRef90_UPI0016020AB0	NA	NA
UHGV-1500877_11	eggNOG-mapper	477184.KYC_17487	NA	NA
UHGV-1500877_11	Pfam	PF11041	NA	DUF2612
UHGV-1500877_11	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1500877_12	PHROG	phrog_6	baseplate protein	tail
UHGV-1500877_12	UniRef90	UniRef90_A0A346B181	Baseplate_J domain-containing protein	NA
UHGV-1500877_12	eggNOG-mapper	391165.GbCGDNIH1_1561	homolog of phage Mu protein gp47	NA
UHGV-1500877_12	COG	COG3299	NA	NA
UHGV-1500877_12	Structural annotation	PF03434, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1500877_13	PHROG	phrog_120	baseplate protein	tail
UHGV-1500877_13	UniRef90	UniRef90_Q0BRT8	Phage-related protein	NA
UHGV-1500877_13	eggNOG-mapper	1120985.AUMI01000001_gene2159	NA	NA
UHGV-1500877_13	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-1500877_14	PHROG	phrog_11	baseplate protein	tail
UHGV-1500877_14	UniRef90	UniRef90_A0A516MLF8	Putative spike protein	NA
UHGV-1500877_14	eggNOG-mapper	1453496.AT03_13210	Baseplate assembly protein	NA
UHGV-1500877_14	Pfam	PF18352	NA	Gp138_N
UHGV-1500877_14	Pfam	PF18946	GpV Apex motif	Apex
UHGV-1500877_14	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1500877_14	Structural annotation	PF18352, MF_01345_A, TIGR01644, COG4540	NA	NA
UHGV-1500877_15	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1500877_15	UniRef90	UniRef90_UPI001F40899B	STN domain-containing protein	NA
UHGV-1500877_15	eggNOG-mapper	1120985.AUMI01000001_gene2161	NA	NA
UHGV-1500877_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1500877_16	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-1500877_16	eggNOG-mapper	1120985.AUMI01000001_gene2162	NA	NA
UHGV-1500877_16	Structural annotation	PF06531	NA	NA
UHGV-1500877_17	PHROG	phrog_817	tail fiber protein	tail
UHGV-1500877_17	eggNOG-mapper	1120985.AUMI01000001_gene2163	NA	NA
UHGV-1500877_17	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1500877_17	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1500877_18	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1500877_18	UniRef90	UniRef90_I9LG88	Phage tape measure protein	NA
UHGV-1500877_18	eggNOG-mapper	1122947.FR7_2621	tape measure	NA
UHGV-1500877_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1500877_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1500877_18	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1500877_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1500877_20	PHROG	phrog_1613	tail assembly chaperone	tail
UHGV-1500877_20	eggNOG-mapper	1235802.C823_01086	NA	NA
UHGV-1500877_20	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1500877_20	Structural annotation	PF21822	NA	NA
UHGV-1500877_21	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1500877_21	UniRef90	UniRef90_UPI0001E4A25E	NA	NA
UHGV-1500877_21	eggNOG-mapper	1118235.CAJH01000039_gene2476	NA	NA
UHGV-1500877_21	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-1500877_21	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1500877_22	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1500877_22	UniRef90	UniRef90_A0A346B172	NA	NA
UHGV-1500877_22	eggNOG-mapper	1120985.AUMI01000001_gene2168	NA	NA
UHGV-1500877_22	Pfam	PF11863	NA	DUF3383
UHGV-1500877_22	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1500877_23	PHROG	phrog_7975	tail terminator	connector
UHGV-1500877_23	Structural annotation	PF09646	NA	NA
UHGV-1500877_24	PHROG	phrog_939	head protein	head and packaging
UHGV-1500877_24	eggNOG-mapper	1120985.AUMI01000019_gene2229	NA	NA
UHGV-1500877_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1500877_25	PHROG	phrog_222	tail protein	tail
UHGV-1500877_25	UniRef90	UniRef90_A0A2I7QJD5	Neck protein	NA
UHGV-1500877_25	eggNOG-mapper	243265.plu2894	NA	NA
UHGV-1500877_26	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1500877_26	UniRef90	UniRef90_UPI000417E33D	NA	NA
UHGV-1500877_26	eggNOG-mapper	1120985.AUMI01000019_gene2231	NA	NA
UHGV-1500877_26	Pfam	PF13262	NA	DUF4054
UHGV-1500877_26	Structural annotation	PF13262	NA	NA
UHGV-1500877_27	PHROG	phrog_17409	NA	unknown function
UHGV-1500877_27	Structural annotation	PF09124	NA	NA
UHGV-1500877_28	PHROG	phrog_264	major head protein	head and packaging
UHGV-1500877_28	UniRef90	UniRef90_UPI00040BF0A9	NA	NA
UHGV-1500877_28	eggNOG-mapper	1120985.AUMI01000019_gene2233	NA	NA
UHGV-1500877_28	Pfam	PF09950	NA	DUF2184
UHGV-1500877_28	COG	COG4834	NA	NA
UHGV-1500877_28	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1500877_29	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-1500877_29	eggNOG-mapper	1278971.AOGF01000014_gene1717	NA	NA
UHGV-1500877_29	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1500877_30	KOfam	K09960	NA	NA
UHGV-1500877_30	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-1500877_30	UniRef90	UniRef90_A0A642A9F5	NA	NA
UHGV-1500877_30	eggNOG-mapper	1453496.AT03_13285	NA	NA
UHGV-1500877_30	Pfam	PF09979	NA	DUF2213
UHGV-1500877_30	COG	COG3566	NA	NA
UHGV-1500877_30	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1500877_32	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1500877_32	UniRef90	UniRef90_UPI001AB05865	minor capsid protein	NA
UHGV-1500877_32	eggNOG-mapper	71421.HI_1407	Phage Mu protein F like protein	NA
UHGV-1500877_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1500877_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1500877_32	COG	COG2369	NA	NA
UHGV-1500877_33	KOfam	K09961	NA	NA
UHGV-1500877_33	PHROG	phrog_146	portal protein	head and packaging
UHGV-1500877_33	UniRef90	UniRef90_UPI0012DECB78	NA	NA
UHGV-1500877_33	eggNOG-mapper	1120985.AUMI01000019_gene2237	NA	NA
UHGV-1500877_33	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1500877_33	COG	COG3567	NA	NA
UHGV-1500877_33	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1500877_34	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1500877_34	UniRef90	UniRef90_A0A2M7FBY3	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1500877_34	eggNOG-mapper	537013.CLOSTMETH_01727	Terminase RNaseH-like domain	NA
UHGV-1500877_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1500877_34	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1500877_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1500877_34	COG	COG5362	Phage terminase large subunit	NA
UHGV-1500877_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1500877_35	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1500877_35	UniRef90	UniRef90_A0A415YC75	Phage portal protein	NA
UHGV-1500877_35	eggNOG-mapper	1445809.A0A0A7AR21_9CAUD	Terminase small subunit	NA
UHGV-1500877_35	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1500877_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1500877_35	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1500877_36	UniRef90	UniRef90_D8GW75	Guanylate kinase-like domain-containing protein	NA
UHGV-1500877_36	COG	COG3943	NA	NA
UHGV-1500877_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1500877_38	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-1500877_38	eggNOG-mapper	1511.CLOST_1536	NA	NA
UHGV-1500877_38	Pfam	PF06356	NA	DUF1064
UHGV-1500877_38	Structural annotation	PF06356, NF033179	NA	NA
UHGV-1500877_39	PHROG	phrog_5984	NA	unknown function
UHGV-1500877_39	eggNOG-mapper	1232443.BAIA02000135_gene1446	NA	NA
UHGV-1500877_39	Pfam	PF19561	NA	DUF6083
UHGV-1500877_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1500877_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1500877_42	UniRef90	UniRef90_A0A316S4Z3	Single-stranded DNA-binding protein	NA
UHGV-1500877_42	eggNOG-mapper	1262915.BN574_00939	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1500877_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1500877_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1500877_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1500877_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1500877_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1500877_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1500877_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1500877_45	UniRef90	UniRef90_UPI001032A0E4	dUTP diphosphatase	NA
UHGV-1500877_45	eggNOG-mapper	883156.HMPREF9282_00525	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1500877_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-1500877_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1500877_45	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1500877_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1500877_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1500877_46	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1500877_46	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1500877_46	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1500877_50	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1500877_51	Structural annotation	PF19923	NA	NA
UHGV-1500877_52	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1500877_52	PHROG	phrog_5696	NA	unknown function
UHGV-1500877_52	UniRef90	UniRef90_A0A415ZKZ6	SAM-dependent DNA methyltransferase	NA
UHGV-1500877_52	eggNOG-mapper	445972.ANACOL_00159	N-6 DNA Methylase	NA
UHGV-1500877_52	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1500877_52	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1500877_52	Structural annotation	COG0286	NA	NA