UHGV-1500972

Genome information

Genome length 35,257 bps

CDS count 43

Completeness 54.12% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-1500972
vOTU ID	vOTU-023899
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0240214
BioSample	SAMEA4431948
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	54.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.3
Jumbo phage	No

Genome content
Genome length	35,257 bps
GC content	28.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.69%
Average CDS length	754.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1500972_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1500972_2	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1500972_2	UniRef90	UniRef90_UPI0008D9E31D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1500972_2	eggNOG-mapper	1408823.AXUS01000024_gene2703	crossover junction endodeoxyribonuclease activity	NA
UHGV-1500972_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1500972_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1500972_2	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1500972_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1500972_3	UniRef90	UniRef90_UPI0008D9EAA5	NA	NA
UHGV-1500972_3	eggNOG-mapper	1292035.H476_1023	sigma factor activity	NA
UHGV-1500972_3	Pfam	PF07374	NA	DUF1492
UHGV-1500972_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1500972_3	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1500972_6	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1500972_6	UniRef90	UniRef90_UPI0018AB1359	phage terminase small subunit	NA
UHGV-1500972_6	eggNOG-mapper	1292035.H476_1020	DNA packaging	NA
UHGV-1500972_6	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1500972_6	COG	COG5484	NA	NA
UHGV-1500972_6	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1500972_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1500972_7	PHROG	phrog_10250	NA	unknown function
UHGV-1500972_7	UniRef90	UniRef90_A0A1C6CH21	Phage terminase, large subunit, PBSX family	NA
UHGV-1500972_7	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-1500972_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1500972_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1500972_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-1500972_7	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1500972_8	PHROG	phrog_64	portal protein	head and packaging
UHGV-1500972_8	UniRef90	UniRef90_A0A1G9U0A6	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1500972_8	eggNOG-mapper	536233.CLO_1835	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1500972_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1500972_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1500972_9	PHROG	phrog_918	NA	unknown function
UHGV-1500972_9	UniRef90	UniRef90_UPI0008D94115	NA	NA
UHGV-1500972_9	eggNOG-mapper	888055.HMPREF9015_01979	NA	NA
UHGV-1500972_9	Pfam	PF19791	NA	DUF6275
UHGV-1500972_9	Structural annotation	PF19791	NA	NA
UHGV-1500972_10	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-1500972_10	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-1500972_10	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-1500972_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1500972_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1500972_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1500972_11	UniRef90	UniRef90_UPI0018AB6737	phage scaffolding protein	NA
UHGV-1500972_11	eggNOG-mapper	1582149.A0A0A8WEG1_9CAUD	Phage minor structural protein GP20	NA
UHGV-1500972_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1500972_11	Structural annotation	PF06810	NA	NA
UHGV-1500972_12	PHROG	phrog_909	major head protein	head and packaging
UHGV-1500972_12	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-1500972_12	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-1500972_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-1500972_13	UniRef90	UniRef90_A0A1G9TZ64	Phage major capsid protein E	NA
UHGV-1500972_13	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1500972_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1500972_13	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1500972_14	PHROG	phrog_4020	NA	unknown function
UHGV-1500972_14	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-1500972_15	PHROG	phrog_8435	NA	unknown function
UHGV-1500972_15	UniRef90	UniRef90_W6N5C6	Conserved protein	NA
UHGV-1500972_15	eggNOG-mapper	748727.CLJU_c31280	NA	NA
UHGV-1500972_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1500972_16	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-1500972_16	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1500972_17	PHROG	phrog_7585	NA	unknown function
UHGV-1500972_17	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-1500972_17	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1500972_18	PHROG	phrog_6686	tail tube protein	tail
UHGV-1500972_18	UniRef90	UniRef90_UPI001CF4E607	Ig-like domain-containing protein	NA
UHGV-1500972_18	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-1500972_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1500972_19	PHROG	phrog_6280	NA	unknown function
UHGV-1500972_19	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-1500972_19	eggNOG-mapper	536233.CLO_0548	NA	NA
UHGV-1500972_20	PHROG	phrog_6541	NA	unknown function
UHGV-1500972_20	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-1500972_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1500972_21	UniRef90	UniRef90_UPI0008DA27EB	phage tail tape measure protein	NA
UHGV-1500972_21	eggNOG-mapper	398511.BpOF4_04430	phage tail tape measure protein	NA
UHGV-1500972_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1500972_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1500972_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1500972_21	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1500972_22	PHROG	phrog_36410	NA	unknown function
UHGV-1500972_22	UniRef90	UniRef90_UPI0008D9412B	phage tail family protein	NA
UHGV-1500972_22	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-1500972_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1500972_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1500972_22	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1500972_23	PHROG	phrog_538	minor tail protein	tail
UHGV-1500972_23	UniRef90	UniRef90_UPI0018AAAF34	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1500972_23	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1500972_23	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1500972_23	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1500972_24	PHROG	phrog_1220	head protein	head and packaging
UHGV-1500972_24	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-1500972_24	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-1500972_24	Structural annotation	PF20747	NA	NA
UHGV-1500972_27	PHROG	phrog_17134	NA	unknown function
UHGV-1500972_27	eggNOG-mapper	1196323.ALKF01000147_gene1282	NA	NA
UHGV-1500972_27	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1500972_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1500972_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1500972_28	UniRef90	UniRef90_C4II13	Phage integrase	NA
UHGV-1500972_28	eggNOG-mapper	632245.CLP_2897	Belongs to the 'phage' integrase family	NA
UHGV-1500972_28	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1500972_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1500972_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1500972_28	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1500972_29	PHROG	phrog_199	holin	lysis
UHGV-1500972_29	UniRef90	UniRef90_UPI001E61EBDA	phage holin family protein	NA
UHGV-1500972_29	eggNOG-mapper	536233.CLO_1583	toxin secretion phage lysis holin	NA
UHGV-1500972_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1500972_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1500972_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1500972_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1500972_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1500972_30	PHROG	phrog_3088	amidase	lysis
UHGV-1500972_30	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-1500972_30	eggNOG-mapper	1292035.H476_0998	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500972_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1500972_30	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1500972_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1500972_30	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-1500972_32	PHROG	phrog_1281	NA	unknown function
UHGV-1500972_32	UniRef90	UniRef90_UPI0005E66F5E	NA	NA
UHGV-1500972_32	eggNOG-mapper	935948.KE386495_gene1162	NA	NA
UHGV-1500972_32	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1500972_32	COG	COG3600	NA	NA
UHGV-1500972_32	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1500972_33	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-1500972_33	PHROG	phrog_13094	NA	unknown function
UHGV-1500972_33	UniRef90	UniRef90_UPI0018AA38F5	cell wall-binding repeat-containing protein	NA
UHGV-1500972_33	eggNOG-mapper	1151292.QEW_2547	cell wall organization	NA
UHGV-1500972_33	PADLOC	drt-cluster302	DRT	DRT
UHGV-1500972_33	Pfam	PF04122	ell wall binding domain 2 (CWB2)	CW_binding_2
UHGV-1500972_33	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1500972_33	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1500972_37	eggNOG-mapper	1211817.CCAT010000049_gene2451	NA	NA
UHGV-1500972_39	PHROG	phrog_5156	NA	unknown function
UHGV-1500972_39	UniRef90	UniRef90_A0A1C5P9M1	AAA-like domain	NA
UHGV-1500972_39	eggNOG-mapper	1443125.Z962_p0079	COG0433 Predicted ATPase	NA
UHGV-1500972_39	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1500972_39	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-1500972_41	PHROG	phrog_18533	NA	unknown function
UHGV-1500972_42	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1500972_42	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1500972_42	UniRef90	UniRef90_UPI0008DA0A0D	ParM/StbA family protein	NA
UHGV-1500972_42	eggNOG-mapper	573061.Clocel_3521	StbA protein	NA
UHGV-1500972_42	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1500972_42	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-1500972_42	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-1500972_42	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-1500972_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1500972_43	PHROG	phrog_95	integrase	integration and excision
UHGV-1500972_43	UniRef90	UniRef90_UPI0011DDD616	recombinase family protein	NA
UHGV-1500972_43	eggNOG-mapper	272563.CD630_18820	resolvase	NA
UHGV-1500972_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-1500972_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1500972_43	Structural annotation	PF07508, PF14282, NF041201	NA	NA