UHGV-1501070

Genome information

Genome length 35,208 bps

CDS count 44

Completeness 93.45% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-1501070
vOTU ID	vOTU-066337
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239859
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.86
Jumbo phage	No

Genome content
Genome length	35,208 bps
GC content	40.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.72%
Average CDS length	728.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1501070_1	UniRef90	UniRef90_W1I1W6	Uncultured bacterium extrachromosomal DNA RGI00148	NA
UHGV-1501070_1	eggNOG-mapper	742765.HMPREF9457_02428	NA	NA
UHGV-1501070_3	eggNOG-mapper	1235800.C819_02701	NA	NA
UHGV-1501070_4	UniRef90	UniRef90_R6BU80	Transposase Mutator family	NA
UHGV-1501070_4	eggNOG-mapper	658655.HMPREF0988_02516	transposase activity	NA
UHGV-1501070_4	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-1501070_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1501070_5	PHROG	phrog_3088	amidase	lysis
UHGV-1501070_5	UniRef90	UniRef90_UPI00156D7EEE	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1501070_5	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-1501070_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1501070_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1501070_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1501070_6	PHROG	phrog_27545	NA	unknown function
UHGV-1501070_6	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-1501070_6	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1501070_6	Structural annotation	PF16170	NA	NA
UHGV-1501070_7	PHROG	phrog_372	tail protein	tail
UHGV-1501070_7	UniRef90	UniRef90_UPI001B842501	NA	NA
UHGV-1501070_7	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-1501070_7	Pfam	PF05895	NA	DUF859
UHGV-1501070_7	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1501070_8	PHROG	phrog_1330	tail protein	tail
UHGV-1501070_8	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-1501070_8	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1501070_8	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1501070_9	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1501070_9	Structural annotation	NF040910	NA	NA
UHGV-1501070_10	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-1501070_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1501070_12	PHROG	phrog_819	tail protein	tail
UHGV-1501070_12	UniRef90	UniRef90_UPI0006B14F6F	collagen-like protein	NA
UHGV-1501070_12	eggNOG-mapper	1232452.BAIB02000007_gene1608	Collagen triple helix repeat	NA
UHGV-1501070_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1501070_12	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1501070_13	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1501070_13	PHROG	phrog_819	tail protein	tail
UHGV-1501070_13	UniRef90	UniRef90_UPI00196B7043	collagen-like protein	NA
UHGV-1501070_13	eggNOG-mapper	1232452.BAIB02000007_gene1609	Collagen triple helix repeat (20 copies)	NA
UHGV-1501070_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1501070_13	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1501070_14	UniRef90	UniRef90_UPI001A9BB450	collagen-like protein	NA
UHGV-1501070_14	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-1501070_15	PHROG	phrog_19695	NA	unknown function
UHGV-1501070_15	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-1501070_15	Structural annotation	PF19714	NA	NA
UHGV-1501070_16	PHROG	phrog_819	tail protein	tail
UHGV-1501070_16	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-1501070_16	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-1501070_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1501070_17	PHROG	phrog_14030	NA	unknown function
UHGV-1501070_17	UniRef90	UniRef90_A0A3E3JYD3	Peptidase M23	NA
UHGV-1501070_17	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-1501070_17	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1501070_17	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1501070_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1501070_17	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1501070_18	PHROG	phrog_13289	tail protein	tail
UHGV-1501070_18	UniRef90	UniRef90_A0A3E3JY67	Prophage_tail domain-containing protein	NA
UHGV-1501070_18	eggNOG-mapper	1232452.BAIB02000007_gene1614	Prophage endopeptidase tail	NA
UHGV-1501070_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1501070_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1501070_18	COG	COG4926	Phage-related protein	NA
UHGV-1501070_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1501070_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1501070_19	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-1501070_19	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-1501070_19	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1501070_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-1501070_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1501070_20	PHROG	phrog_23464	NA	unknown function
UHGV-1501070_20	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-1501070_20	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-1501070_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1501070_23	PHROG	phrog_88	major tail protein	tail
UHGV-1501070_23	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-1501070_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1501070_23	COG	COG5492	NA	NA
UHGV-1501070_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1501070_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1501070_24	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1501070_25	PHROG	phrog_78	tail terminator	connector
UHGV-1501070_25	Structural annotation	PF05657	NA	NA
UHGV-1501070_26	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-1501070_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1501070_28	PHROG	phrog_31690	NA	unknown function
UHGV-1501070_28	eggNOG-mapper	1232452.BAIB02000007_gene1624	NA	NA
UHGV-1501070_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1501070_29	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-1501070_29	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1501070_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1501070_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1501070_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1501070_29	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1501070_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1501070_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1501070_30	UniRef90	UniRef90_A0A3E3JYT5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1501070_30	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1501070_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1501070_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1501070_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1501070_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1501070_31	UniRef90	UniRef90_A0A3E3JY21	Phage portal protein	NA
UHGV-1501070_31	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1501070_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1501070_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1501070_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1501070_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1501070_32	UniRef90	UniRef90_A0A3E3JY25	Terminase large subunit	NA
UHGV-1501070_32	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1501070_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1501070_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1501070_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1501070_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1501070_33	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1501070_33	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1501070_33	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1501070_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1501070_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1501070_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1501070_34	UniRef90	UniRef90_A0A3E3JY08	HNH endonuclease	NA
UHGV-1501070_34	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-1501070_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1501070_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1501070_35	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-1501070_35	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-1501070_35	Structural annotation	NF008671, COG4710	NA	NA
UHGV-1501070_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1501070_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1501070_37	UniRef90	UniRef90_A0A828SZY9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1501070_37	eggNOG-mapper	1232452.BAIB02000007_gene1633	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1501070_37	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-1501070_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1501070_37	COG	COG0338	DNA-adenine methylase	NA
UHGV-1501070_37	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-1501070_38	Structural annotation	PF15968	NA	NA
UHGV-1501070_39	eggNOG-mapper	1009370.ALO_15872	NA	NA
UHGV-1501070_39	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-1501070_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1501070_40	UniRef90	UniRef90_UPI00189836E6	RNA polymerase subunit sigma-70	NA
UHGV-1501070_40	eggNOG-mapper	1232452.BAIB02000007_gene1634	NA	NA
UHGV-1501070_40	Structural annotation	PF02996	NA	NA
UHGV-1501070_42	PHROG	phrog_15198	NA	unknown function
UHGV-1501070_42	UniRef90	UniRef90_UPI00092FE47F	NA	NA
UHGV-1501070_42	Pfam	PF04448	NA	DUF551