UHGV-1501335

Genome information

Genome length 34,530 bps

CDS count 53

Completeness 99.00% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-1501335
vOTU ID	vOTU-010852
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0266097
BioSample	SAMN06016364
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.32
Jumbo phage	No

Genome content
Genome length	34,530 bps
GC content	58.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.14%
Average CDS length	611.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1501335_1	eggNOG-mapper	1408324.JNJK01000001_gene550	NA	NA
UHGV-1501335_2	PHROG	phrog_5783	NA	unknown function
UHGV-1501335_2	UniRef90	UniRef90_A0A6N8H308	NYN domain-containing protein	NA
UHGV-1501335_2	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-1501335_2	Pfam	PF01936	NYN domain	NYN
UHGV-1501335_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1501335_2	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-1501335_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1501335_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1501335_3	UniRef90	UniRef90_A0A6N8H052	Helix-turn-helix domain-containing protein	NA
UHGV-1501335_3	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-1501335_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1501335_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1501335_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1501335_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1501335_4	UniRef90	UniRef90_A0A6N8H2D7	XRE family transcriptional regulator	NA
UHGV-1501335_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1501335_9	PHROG	phrog_10280	NA	unknown function
UHGV-1501335_9	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-1501335_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1501335_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1501335_11	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1501335_11	Pfam	PF05772	NinB protein	NinB
UHGV-1501335_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1501335_12	eggNOG-mapper	1156937.MFUM_90007	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1501335_12	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1501335_12	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1501335_13	PHROG	phrog_7566	NA	unknown function
UHGV-1501335_13	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1501335_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1501335_14	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-1501335_14	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-1501335_15	PHROG	phrog_1029	NA	unknown function
UHGV-1501335_15	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-1501335_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1501335_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1501335_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1501335_16	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-1501335_16	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1501335_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1501335_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1501335_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1501335_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1501335_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1501335_17	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1501335_17	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-1501335_17	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-1501335_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1501335_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1501335_17	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1501335_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1501335_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1501335_18	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-1501335_18	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-1501335_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1501335_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1501335_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-1501335_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1501335_19	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1501335_19	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1501335_19	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-1501335_19	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1501335_19	Pfam	PF13614	AAA domain	AAA_31
UHGV-1501335_19	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1501335_19	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1501335_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1501335_20	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1501335_20	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-1501335_20	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1501335_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1501335_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1501335_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1501335_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1501335_22	UniRef90	UniRef90_A0A6N8H4L3	Sigma70_r4 domain-containing protein	NA
UHGV-1501335_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1501335_22	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1501335_23	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1501335_23	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-1501335_23	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1501335_24	Structural annotation	PF19962	NA	NA
UHGV-1501335_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1501335_25	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-1501335_25	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-1501335_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1501335_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1501335_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1501335_26	PHROG	phrog_104	portal protein	head and packaging
UHGV-1501335_26	UniRef90	UniRef90_A0A6N8H2B6	Phage portal protein	NA
UHGV-1501335_26	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1501335_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1501335_27	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1501335_27	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1501335_27	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1501335_27	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1501335_27	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1501335_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1501335_28	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-1501335_28	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1501335_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1501335_29	UniRef90	UniRef90_A0A8J6IQD2	Phage scaffolding protein	NA
UHGV-1501335_29	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-1501335_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1501335_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-1501335_30	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-1501335_30	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-1501335_30	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1501335_31	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1501335_31	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1501335_31	Structural annotation	PF09355	NA	NA
UHGV-1501335_32	PHROG	phrog_501	head closure Hc1	connector
UHGV-1501335_32	UniRef90	UniRef90_D2BQF2	NA	NA
UHGV-1501335_32	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1501335_32	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1501335_33	PHROG	phrog_387	neck protein	connector
UHGV-1501335_33	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-1501335_34	PHROG	phrog_123	tail terminator	connector
UHGV-1501335_34	eggNOG-mapper	665950.HMPREF1025_02526	NA	NA
UHGV-1501335_34	Structural annotation	PF06141	NA	NA
UHGV-1501335_35	PHROG	phrog_117	major tail protein	tail
UHGV-1501335_35	UniRef90	UniRef90_A0A6N8H024	Phage tail protein	NA
UHGV-1501335_35	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-1501335_35	COG	COG5492	NA	NA
UHGV-1501335_35	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1501335_36	PHROG	phrog_1526	NA	unknown function
UHGV-1501335_36	UniRef90	UniRef90_A0A2X3SH55	NA	NA
UHGV-1501335_36	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-1501335_37	PHROG	phrog_1633	NA	unknown function
UHGV-1501335_37	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-1501335_37	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-1501335_37	Pfam	PF17318	NA	DUF5361
UHGV-1501335_37	Structural annotation	PF17318	NA	NA
UHGV-1501335_38	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1501335_38	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-1501335_38	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-1501335_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1501335_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1501335_38	COG	COG5283	Phage-related tail protein	NA
UHGV-1501335_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1501335_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1501335_39	UniRef90	UniRef90_UPI0011065E28	phage tail family protein	NA
UHGV-1501335_39	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-1501335_39	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1501335_40	PHROG	phrog_538	minor tail protein	tail
UHGV-1501335_40	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1501335_40	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1501335_40	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1501335_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1501335_41	PHROG	phrog_9534	head protein	head and packaging
UHGV-1501335_41	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-1501335_45	PHROG	phrog_15594	NA	unknown function
UHGV-1501335_45	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1501335_45	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1501335_46	PHROG	phrog_31538	NA	unknown function
UHGV-1501335_47	PHROG	phrog_13589	NA	unknown function
UHGV-1501335_47	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-1501335_48	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1501335_49	eggNOG-mapper	1334046.AYTB01000013_gene457	ATPase involved in DNA repair	NA
UHGV-1501335_49	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1501335_50	Structural annotation	PF20328, NF033679, COG4935	NA	NA
UHGV-1501335_51	PHROG	phrog_38190	NA	unknown function
UHGV-1501335_51	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-1501335_52	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1501335_52	PHROG	phrog_6700	endolysin	lysis
UHGV-1501335_52	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-1501335_52	eggNOG-mapper	1122137.AQXF01000004_gene1863	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-1501335_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1501335_52	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1501335_53	PHROG	phrog_199	holin	lysis
UHGV-1501335_53	UniRef90	UniRef90_A0A6N8H4I3	Holin	NA
UHGV-1501335_53	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-1501335_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1501335_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1501335_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA