UHGV-1501384

Genome information

Genome length 35,220 bps

CDS count 44

Completeness 81.35% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1501384
vOTU ID	vOTU-036050
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239936
BioSample	SAMEA2042518
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.45
Jumbo phage	No

Genome content
Genome length	35,220 bps
GC content	42.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.82%
Average CDS length	731.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1501384_1	eggNOG-mapper	478749.BRYFOR_08816	Manganese containing catalase	NA
UHGV-1501384_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-1501384_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1501384_2	PHROG	phrog_435	endolysin	lysis
UHGV-1501384_2	UniRef90	UniRef90_A0A1C6J814	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1501384_2	eggNOG-mapper	1522092.A0A090D823_9CAUD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1501384_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1501384_2	Pfam	PF05036	SPOR domain	SPOR
UHGV-1501384_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1501384_3	PHROG	phrog_199	holin	lysis
UHGV-1501384_3	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-1501384_3	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-1501384_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1501384_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1501384_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1501384_6	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-1501384_6	PHROG	phrog_6616	tail protein	tail
UHGV-1501384_6	UniRef90	UniRef90_UPI001899D1AB	collagen-like protein	NA
UHGV-1501384_6	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-1501384_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1501384_6	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-1501384_7	PHROG	phrog_1194	NA	unknown function
UHGV-1501384_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1501384_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1501384_8	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-1501384_8	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-1501384_8	COG	COG5412	Phage-related protein	NA
UHGV-1501384_9	PHROG	phrog_706	NA	unknown function
UHGV-1501384_9	UniRef90	UniRef90_UPI00189B451E	Gp15 family bacteriophage protein	NA
UHGV-1501384_9	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-1501384_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1501384_9	Structural annotation	PF06854	NA	NA
UHGV-1501384_10	PHROG	phrog_11299	NA	unknown function
UHGV-1501384_10	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-1501384_10	Structural annotation	PF10666	NA	NA
UHGV-1501384_11	PHROG	phrog_3099	NA	unknown function
UHGV-1501384_11	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-1501384_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1501384_12	PHROG	phrog_3266	tail completion	connector
UHGV-1501384_12	Structural annotation	PF12691	NA	NA
UHGV-1501384_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1501384_13	UniRef90	UniRef90_UPI001D084F02	minor capsid protein	NA
UHGV-1501384_13	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1501384_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1501384_13	Structural annotation	PF11114	NA	NA
UHGV-1501384_14	PHROG	phrog_3366	NA	unknown function
UHGV-1501384_14	Pfam	PF20536	NA	DUF6751
UHGV-1501384_14	Structural annotation	PF20536	NA	NA
UHGV-1501384_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1501384_15	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-1501384_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-1501384_16	UniRef90	UniRef90_UPI00189A09FD	phage major capsid protein	NA
UHGV-1501384_16	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-1501384_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1501384_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1501384_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1501384_16	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1501384_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1501384_17	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-1501384_17	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-1501384_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1501384_17	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1501384_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1501384_18	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-1501384_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1501384_19	PHROG	phrog_27009	NA	unknown function
UHGV-1501384_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1501384_20	UniRef90	UniRef90_UPI001D09004C	phage minor capsid protein	NA
UHGV-1501384_20	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-1501384_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1501384_20	COG	COG2369	NA	NA
UHGV-1501384_20	Structural annotation	PF06152, PF12636	NA	NA
UHGV-1501384_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1501384_21	UniRef90	UniRef90_UPI00189F661F	phage portal protein	NA
UHGV-1501384_21	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-1501384_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1501384_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1501384_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1501384_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1501384_22	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-1501384_22	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-1501384_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1501384_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1501384_22	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1501384_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1501384_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1501384_23	UniRef90	UniRef90_A0A352BM04	Phage portal protein	NA
UHGV-1501384_23	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-1501384_23	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1501384_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1501384_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1501384_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1501384_24	eggNOG-mapper	1235802.C823_04588	NA	NA
UHGV-1501384_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1501384_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-1501384_25	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-1501384_25	Structural annotation	PF02996	NA	NA
UHGV-1501384_26	PHROG	phrog_19011	NA	unknown function
UHGV-1501384_26	Structural annotation	PF17516, COG4466	NA	NA
UHGV-1501384_28	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-1501384_29	PHROG	phrog_4601	NA	unknown function
UHGV-1501384_31	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-1501384_32	PHROG	phrog_15077	NA	unknown function
UHGV-1501384_32	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-1501384_32	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-1501384_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1501384_32	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1501384_33	PHROG	phrog_8470	NA	unknown function
UHGV-1501384_33	UniRef90	UniRef90_UPI001D006C08	PcfJ domain-containing protein	NA
UHGV-1501384_33	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-1501384_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1501384_33	Structural annotation	PF14284	NA	NA
UHGV-1501384_34	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-1501384_35	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1501384_35	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1501384_35	UniRef90	UniRef90_A0A417CPS0	RNase H type-1 domain-containing protein	NA
UHGV-1501384_35	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-1501384_35	Pfam	PF00075	RNase H	RNase_H
UHGV-1501384_35	COG	COG0328	Ribonuclease HI	NA
UHGV-1501384_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1501384_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1501384_36	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-1501384_36	Structural annotation	PF01446	NA	NA
UHGV-1501384_40	PHROG	phrog_750	NA	unknown function
UHGV-1501384_40	Structural annotation	PF13835, NF040858	NA	NA
UHGV-1501384_44	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1501384_44	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-1501384_44	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-1501384_44	Structural annotation	PF06573	NA	NA