UHGV-1501532

Genome information

Genome length 37,474 bps

CDS count 37

Completeness 57.19% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1501532
vOTU ID	vOTU-027548
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271461
BioSample	SAMN06112070
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.76
Jumbo phage	No

Genome content
Genome length	37,474 bps
GC content	31.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.07%
Average CDS length	945.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1501532_2	PHROG	phrog_34398	NA	unknown function
UHGV-1501532_3	Structural annotation	PF13411, NF007069, COG3311	NA	NA
UHGV-1501532_4	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1501532_4	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1501532_4	UniRef90	UniRef90_A0A1W7AF36	Helicase	NA
UHGV-1501532_4	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-1501532_4	PADLOC	DpdE_00003	DpdE	DPD
UHGV-1501532_4	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1501532_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1501532_4	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-1501532_6	Structural annotation	PF02319, COG1321	NA	NA
UHGV-1501532_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1501532_8	PHROG	phrog_3088	amidase	lysis
UHGV-1501532_8	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-1501532_8	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-1501532_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1501532_8	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1501532_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1501532_8	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-1501532_9	PHROG	phrog_608	holin	lysis
UHGV-1501532_9	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-1501532_9	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1501532_9	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1501532_11	KOfam	K16559	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	NA
UHGV-1501532_11	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1501532_11	eggNOG-mapper	86416.Clopa_0354	family 16	NA
UHGV-1501532_11	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-1501532_11	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1501532_11	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1501532_11	Structural annotation	PF03935, PF02368, PF10651, PF18998, PF21461, MF_04116, NF041449, NF007636, COG2273, COG3291, COG2372	NA	NA
UHGV-1501532_13	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-1501532_13	eggNOG-mapper	411901.BACCAC_01130	COG3209 Rhs family protein	NA
UHGV-1501532_13	COG	COG4926	Phage-related protein	NA
UHGV-1501532_13	Structural annotation	PF06266, PF13157, PF13229, NF033679	NA	NA
UHGV-1501532_14	PHROG	phrog_6253	minor tail protein	tail
UHGV-1501532_14	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-1501532_14	eggNOG-mapper	644966.Tmar_0050	Prophage endopeptidase tail	NA
UHGV-1501532_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1501532_14	COG	COG4926	Phage-related protein	NA
UHGV-1501532_14	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-1501532_15	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1501532_15	UniRef90	UniRef90_A0A1I3MEI4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1501532_15	eggNOG-mapper	875454.BAEW01000017_gene1586	Phage tail protein	NA
UHGV-1501532_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1501532_15	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1501532_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1501532_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1501532_15	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-1501532_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1501532_16	UniRef90	UniRef90_UPI001D16E57D	phage tail tape measure protein	NA
UHGV-1501532_16	eggNOG-mapper	537007.BLAHAN_04244	Phage tail tape measure protein, TP901 family	NA
UHGV-1501532_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1501532_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1501532_16	COG	COG5283	Phage-related tail protein	NA
UHGV-1501532_16	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1501532_17	PHROG	phrog_6541	NA	unknown function
UHGV-1501532_18	PHROG	phrog_6280	NA	unknown function
UHGV-1501532_18	UniRef90	UniRef90_UPI001CF35B33	esterase	NA
UHGV-1501532_18	eggNOG-mapper	1196322.A370_04058	NA	NA
UHGV-1501532_19	PHROG	phrog_6686	tail tube protein	tail
UHGV-1501532_19	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-1501532_19	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-1501532_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1501532_20	Structural annotation	PF05657	NA	NA
UHGV-1501532_21	eggNOG-mapper	1443125.Z962_p0058	NA	NA
UHGV-1501532_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1501532_21	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1501532_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1501532_23	PHROG	phrog_4020	NA	unknown function
UHGV-1501532_23	eggNOG-mapper	1211817.CCAT010000049_gene2499	NA	NA
UHGV-1501532_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-1501532_24	UniRef90	UniRef90_UPI001D166481	major capsid protein	NA
UHGV-1501532_24	eggNOG-mapper	59241.E7DNA7_BPDP1	Phage major capsid protein E	NA
UHGV-1501532_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1501532_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1501532_25	Structural annotation	PF02924	NA	NA
UHGV-1501532_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1501532_26	UniRef90	UniRef90_UPI001D0358BD	phage scaffolding protein	NA
UHGV-1501532_26	eggNOG-mapper	326425.lhe_1212	Phage minor structural protein GP20	NA
UHGV-1501532_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1501532_26	Structural annotation	PF06810	NA	NA
UHGV-1501532_28	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1501532_28	UniRef90	UniRef90_UPI0018AB9839	minor capsid protein	NA
UHGV-1501532_28	eggNOG-mapper	536233.CLO_0535	NA	NA
UHGV-1501532_28	Structural annotation	PF06152, NF040688	NA	NA
UHGV-1501532_29	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-1501532_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-1501532_30	UniRef90	UniRef90_UPI001E369C6C	phage portal protein	NA
UHGV-1501532_30	eggNOG-mapper	59241.E7DNA2_BPDP1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1501532_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1501532_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1501532_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1501532_31	UniRef90	UniRef90_UPI001E406D12	PBSX family phage terminase large subunit	NA
UHGV-1501532_31	eggNOG-mapper	59241.E7DNA1_BPDP1	Terminase-like family	NA
UHGV-1501532_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1501532_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1501532_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1501532_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1501532_32	PHROG	phrog_23746	NA	unknown function
UHGV-1501532_32	eggNOG-mapper	871584.D9ZNC5_9CAUD	NA	NA
UHGV-1501532_32	Structural annotation	PF10668	NA	NA
UHGV-1501532_33	PHROG	phrog_9079	NA	unknown function
UHGV-1501532_33	eggNOG-mapper	1391646.AVSU01000053_gene947	NA	NA
UHGV-1501532_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1501532_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1501532_34	UniRef90	UniRef90_UPI001D1047F3	site-specific DNA-methyltransferase	NA
UHGV-1501532_34	eggNOG-mapper	469616.FMAG_02606	DNA methylase	NA
UHGV-1501532_34	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1501532_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1501532_34	COG	COG0863	DNA modification methylase	NA
UHGV-1501532_34	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1501532_35	Structural annotation	PF04319, COG2139	NA	NA