UHGV-1502162

Genome information

Genome length 35,279 bps

CDS count 62

Completeness 93.30% (high-quality)

geNomad score 0.9462

Prediction confidence Confident

Genome information
Genome ID	UHGV-1502162
vOTU ID	vOTU-070669
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0240379
BioSample	SAMEA2580103
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9462
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.04
Jumbo phage	No

Genome content
Genome length	35,279 bps
GC content	34.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.63%
Average CDS length	538.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1502162_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1502162_1	PHROG	phrog_3088	amidase	lysis
UHGV-1502162_1	UniRef90	UniRef90_A0A1Q6KR91	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1502162_1	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1502162_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1502162_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1502162_2	PHROG	phrog_199	holin	lysis
UHGV-1502162_2	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-1502162_2	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-1502162_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1502162_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1502162_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1502162_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1502162_3	Structural annotation	NF040910	NA	NA
UHGV-1502162_4	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-1502162_5	PHROG	phrog_24267	NA	unknown function
UHGV-1502162_5	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-1502162_5	eggNOG-mapper	411468.CLOSCI_00188	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1502162_5	COG	COG4675	Phage tail collar domain	NA
UHGV-1502162_6	PHROG	phrog_38707	NA	unknown function
UHGV-1502162_6	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1502162_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1502162_8	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-1502162_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1502162_9	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-1502162_9	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1502162_9	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1502162_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1502162_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1502162_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1502162_9	COG	COG4926	Phage-related protein	NA
UHGV-1502162_9	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1502162_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1502162_10	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-1502162_10	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-1502162_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1502162_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1502162_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1502162_11	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1502162_11	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-1502162_11	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-1502162_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1502162_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1502162_11	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1502162_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1502162_12	PHROG	phrog_3033	NA	unknown function
UHGV-1502162_13	PHROG	phrog_709	NA	unknown function
UHGV-1502162_13	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-1502162_13	Structural annotation	PF11836	NA	NA
UHGV-1502162_14	PHROG	phrog_88	major tail protein	tail
UHGV-1502162_14	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-1502162_14	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-1502162_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1502162_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1502162_15	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-1502162_15	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1502162_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1502162_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1502162_16	PHROG	phrog_78	tail terminator	connector
UHGV-1502162_16	UniRef90	UniRef90_A0A0Z8IUE1	Prophage pi2 protein 38	NA
UHGV-1502162_16	eggNOG-mapper	1235802.C823_05272	NA	NA
UHGV-1502162_16	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1502162_17	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1502162_17	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-1502162_18	PHROG	phrog_749	NA	unknown function
UHGV-1502162_18	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-1502162_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1502162_19	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-1502162_19	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-1502162_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1502162_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1502162_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1502162_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1502162_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1502162_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1502162_20	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1502162_20	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1502162_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1502162_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1502162_20	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1502162_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1502162_21	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-1502162_21	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-1502162_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1502162_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1502162_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1502162_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1502162_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1502162_22	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-1502162_22	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1502162_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1502162_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1502162_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1502162_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1502162_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1502162_23	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-1502162_23	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-1502162_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1502162_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1502162_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1502162_25	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-1502162_25	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-1502162_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1502162_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1502162_26	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1502162_28	PHROG	phrog_1828	NA	unknown function
UHGV-1502162_29	UniRef90	UniRef90_G9R105	HIPIP domain-containing protein	NA
UHGV-1502162_29	Pfam	PF01355	High potential iron-sulfur protein	HIPIP
UHGV-1502162_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1502162_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1502162_30	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-1502162_30	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-1502162_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1502162_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-1502162_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1502162_31	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1502162_31	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-1502162_31	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1502162_31	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1502162_32	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1502162_32	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1502162_32	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-1502162_32	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1502162_33	UniRef90	UniRef90_G9R100	GIY-YIG domain-containing protein	NA
UHGV-1502162_33	eggNOG-mapper	1078085.HMPREF1210_01161	GIY-YIG catalytic domain	NA
UHGV-1502162_33	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1502162_33	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-1502162_34	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1502162_34	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-1502162_34	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-1502162_34	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1502162_34	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1502162_34	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1502162_34	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1502162_38	eggNOG-mapper	1232446.BAIE02000011_gene1618	NA	NA
UHGV-1502162_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1502162_40	PHROG	phrog_216	integrase	integration and excision
UHGV-1502162_40	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-1502162_40	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-1502162_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1502162_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1502162_40	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1502162_41	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-1502162_44	PHROG	phrog_8470	NA	unknown function
UHGV-1502162_44	UniRef90	UniRef90_UPI000E4E20B7	PcfJ domain-containing protein	NA
UHGV-1502162_44	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-1502162_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1502162_44	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1502162_45	PHROG	phrog_7445	NA	unknown function
UHGV-1502162_45	UniRef90	UniRef90_UPI001C2C3882	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1502162_45	eggNOG-mapper	1401078.HMPREF2140_05060	PcfK-like protein	NA
UHGV-1502162_45	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1502162_52	PHROG	phrog_585	NA	unknown function
UHGV-1502162_52	UniRef90	UniRef90_UPI000E471944	NA	NA
UHGV-1502162_52	eggNOG-mapper	1159488.SEQMU2_04590	NA	NA
UHGV-1502162_52	Pfam	PF10711	NA	DUF2513
UHGV-1502162_52	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-1502162_54	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1502162_54	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-1502162_54	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-1502162_54	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1502162_54	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1502162_54	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1502162_54	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1502162_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1502162_56	UniRef90	UniRef90_A0A7U9CJR6	HTH cro/C1-type domain-containing protein	NA
UHGV-1502162_56	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-1502162_56	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1502162_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1502162_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1502162_58	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1502162_58	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1502162_58	UniRef90	UniRef90_A0A6N2XYT0	HTH-type transcriptional regulator SinR	NA
UHGV-1502162_58	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-1502162_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1502162_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1502162_59	PHROG	phrog_9418	NA	unknown function
UHGV-1502162_59	eggNOG-mapper	658655.HMPREF0988_00910	NA	NA
UHGV-1502162_59	Structural annotation	PF10233	NA	NA
UHGV-1502162_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1502162_60	PHROG	phrog_95	integrase	integration and excision
UHGV-1502162_60	UniRef90	UniRef90_UPI001C259486	recombinase family protein	NA
UHGV-1502162_60	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-1502162_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1502162_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-1502162_60	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1502162_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1502162_60	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1502162_61	eggNOG-mapper	1232446.BAIE02000003_gene1048	Prokaryotic N-terminal methylation motif	NA
UHGV-1502162_61	Pfam	PF07963	Prokaryotic N-terminal methylation motif	N_methyl
UHGV-1502162_61	NCBIFam	TIGR02532.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA
UHGV-1502162_61	COG	COG4537	Competence protein ComGC	NA