UHGV-1502350

Genome information

Genome length 33,447 bps

CDS count 58

Completeness 82.61% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1502350
vOTU ID	vOTU-024597
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0230673
BioSample	SAMN03283278
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.38
Jumbo phage	No

Genome content
Genome length	33,447 bps
GC content	54.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.33%
Average CDS length	551.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1502350_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1502350_1	UniRef90	UniRef90_A0A1G4FJQ3	Putative phage terminase, small subunit, P27 family	NA
UHGV-1502350_1	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-1502350_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1502350_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1502350_2	UniRef90	UniRef90_A0A1T4YES7	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1502350_2	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1502350_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1502350_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1502350_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1502350_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1502350_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1502350_3	UniRef90	UniRef90_A0A413HUL0	Phage portal protein	NA
UHGV-1502350_3	eggNOG-mapper	864178.E2ELI3_9CAUD	Phage portal protein	NA
UHGV-1502350_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1502350_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1502350_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1502350_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1502350_4	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1502350_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1502350_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1502350_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1502350_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1502350_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1502350_5	UniRef90	UniRef90_UPI00057E1B20	phage major capsid protein	NA
UHGV-1502350_5	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1502350_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1502350_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1502350_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1502350_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1502350_6	PHROG	phrog_749	NA	unknown function
UHGV-1502350_6	UniRef90	UniRef90_A0A4Z0H451	Phage gp6-like head-tail connector protein	NA
UHGV-1502350_6	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-1502350_7	PHROG	phrog_19734	NA	unknown function
UHGV-1502350_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1502350_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1502350_8	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1502350_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1502350_9	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-1502350_9	eggNOG-mapper	1216932.CM240_1386	Phage protein, HK97 gp10 family	NA
UHGV-1502350_9	Structural annotation	TIGR01725	NA	NA
UHGV-1502350_10	PHROG	phrog_88	major tail protein	tail
UHGV-1502350_10	COG	COG5492	NA	NA
UHGV-1502350_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1502350_13	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-1502350_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1502350_13	UniRef90	UniRef90_A0A6N9P4L8	Phage tail tape measure protein	NA
UHGV-1502350_13	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-1502350_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1502350_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1502350_13	COG	COG5283	Phage-related tail protein	NA
UHGV-1502350_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1502350_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1502350_14	eggNOG-mapper	1118055.CAGU01000013_gene767	NA	NA
UHGV-1502350_14	Structural annotation	PF05709, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1502350_15	PHROG	phrog_3558	tail protein	tail
UHGV-1502350_15	UniRef90	UniRef90_UPI001373F113	phage tail protein	NA
UHGV-1502350_15	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1502350_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1502350_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1502350_15	COG	COG4926	Phage-related protein	NA
UHGV-1502350_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1502350_16	PHROG	phrog_199	holin	lysis
UHGV-1502350_16	UniRef90	UniRef90_A0A6G3M4V0	Holin	NA
UHGV-1502350_16	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-1502350_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1502350_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1502350_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1502350_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1502350_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1502350_17	PHROG	phrog_1794	amidase	lysis
UHGV-1502350_17	UniRef90	UniRef90_A0A1Y4NYC1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1502350_17	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1502350_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1502350_17	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1502350_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1502350_17	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1502350_18	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-1502350_18	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1502350_20	PHROG	phrog_22984	NA	unknown function
UHGV-1502350_21	PHROG	phrog_16490	NA	unknown function
UHGV-1502350_22	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1502350_23	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1502350_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1502350_24	PHROG	phrog_95	integrase	integration and excision
UHGV-1502350_24	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-1502350_24	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-1502350_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1502350_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-1502350_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1502350_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1502350_24	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA
UHGV-1502350_25	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-1502350_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1502350_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1502350_28	UniRef90	UniRef90_A0A8E3SLX4	Helix-turn-helix transcriptional regulator	NA
UHGV-1502350_28	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-1502350_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1502350_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1502350_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1502350_42	PHROG	phrog_38338	NA	unknown function
UHGV-1502350_42	UniRef90	UniRef90_UPI00189B3582	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1502350_42	eggNOG-mapper	641112.ACOK01000073_gene2869	NA	NA
UHGV-1502350_43	PHROG	phrog_8470	NA	unknown function
UHGV-1502350_43	UniRef90	UniRef90_UPI001C00AC20	PcfJ domain-containing protein	NA
UHGV-1502350_43	eggNOG-mapper	693746.OBV_25400	PcfJ-like protein	NA
UHGV-1502350_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1502350_43	Structural annotation	PF14284	NA	NA
UHGV-1502350_44	PHROG	phrog_15609	NA	unknown function
UHGV-1502350_44	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-1502350_44	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-1502350_44	Pfam	PF11300	NA	DUF3102
UHGV-1502350_44	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-1502350_44	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1502350_46	Structural annotation	NF037951	NA	NA
UHGV-1502350_49	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1502350_49	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-1502350_49	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-1502350_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1502350_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1502350_49	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1502350_55	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1502350_55	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1502350_55	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1502350_55	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1502350_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1502350_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1502350_56	UniRef90	UniRef90_A0A1I5WIF0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1502350_56	eggNOG-mapper	1304880.JAGB01000001_gene917	PFAM Helix-turn-helix	NA
UHGV-1502350_56	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1502350_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1502350_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1502350_56	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA