UHGV-1502398

Genome information

vOTU vOTU-020390

Genome length 15,910 bps

CDS count 19

Completeness 52.96% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-1502398
vOTU ID	vOTU-020390
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0103743
BioSample	SAMEA3664586
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.72
Jumbo phage	No

Genome content
Genome length	15,910 bps
GC content	50.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	92.69%
Average CDS length	779.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1502398_4	KOfam	K07273	acm; lysozyme	NA
UHGV-1502398_4	PHROG	phrog_291	endolysin	lysis
UHGV-1502398_4	UniRef90	UniRef90_UPI00195EE7EA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1502398_4	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-1502398_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1502398_4	Pfam	PF01476	LysM domain	LysM
UHGV-1502398_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1502398_4	Structural annotation	PF01183, NF003645, COG3757	NA	NA
UHGV-1502398_5	Structural annotation	PF17548	NA	NA
UHGV-1502398_6	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1502398_6	Structural annotation	PF17427	NA	NA
UHGV-1502398_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1502398_8	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-1502398_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-1502398_9	UniRef90	UniRef90_A0A843HJW2	Phage DNA encapsidation protein	NA
UHGV-1502398_9	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1502398_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1502398_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1502398_11	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1502398_11	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-1502398_11	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-1502398_11	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1502398_12	PHROG	phrog_2248	tail protein	tail
UHGV-1502398_12	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-1502398_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1502398_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-1502398_13	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-1502398_13	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-1502398_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1502398_13	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1502398_18	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1502398_18	UniRef90	UniRef90_A0A6G6Y056	SGNH_hydro domain-containing protein	NA
UHGV-1502398_18	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1502398_18	Structural annotation	PF14606, PF08931, NF007819, COG2755	NA	NA