UHGV-1502918

Genome information

vOTU vOTU-020435

Genome length 35,163 bps

CDS count 51

Completeness 76.65% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-1502918
vOTU ID	vOTU-020435
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239572
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.06
Jumbo phage	No

Genome content
Genome length	35,163 bps
GC content	34.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.24%
Average CDS length	632.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1502918_1	PHROG	phrog_1914	NA	unknown function
UHGV-1502918_1	UniRef90	UniRef90_A0A7X8ES72	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1502918_1	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1502918_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1502918_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1502918_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1502918_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1502918_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1502918_2	UniRef90	UniRef90_A0A5S4VTE4	Helix-turn-helix transcriptional regulator	NA
UHGV-1502918_2	eggNOG-mapper	537013.CLOSTMETH_02500	NA	NA
UHGV-1502918_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1502918_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1502918_2	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1502918_8	Structural annotation	NF040595	NA	NA
UHGV-1502918_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1502918_10	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-1502918_10	eggNOG-mapper	1121947.AUHK01000002_gene916	YqaJ-like viral recombinase domain	NA
UHGV-1502918_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1502918_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1502918_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1502918_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1502918_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1502918_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1502918_11	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-1502918_11	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1502918_11	Pfam	PF03837	RecT family	RecT
UHGV-1502918_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1502918_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1502918_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1502918_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1502918_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1502918_12	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-1502918_12	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-1502918_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1502918_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1502918_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1502918_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1502918_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1502918_13	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1502918_13	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-1502918_13	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-1502918_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1502918_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1502918_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1502918_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1502918_14	UniRef90	UniRef90_UPI001AEA2800	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1502918_14	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-1502918_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1502918_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1502918_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1502918_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-1502918_16	UniRef90	UniRef90_UPI001897331D	NA	NA
UHGV-1502918_16	eggNOG-mapper	1173749.S4TNV2_9CAUD	NA	NA
UHGV-1502918_16	Pfam	PF11753	NA	DUF3310
UHGV-1502918_16	Structural annotation	PF11753	NA	NA
UHGV-1502918_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1502918_19	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1502918_19	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1502918_19	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1502918_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1502918_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1502918_20	UniRef90	UniRef90_R6GUX1	Terminase small subunit	NA
UHGV-1502918_20	eggNOG-mapper	1260356.D920_01729	Terminase small subunit	NA
UHGV-1502918_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1502918_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1502918_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1502918_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1502918_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1502918_21	UniRef90	UniRef90_A0A844DY69	PBSX family phage terminase large subunit	NA
UHGV-1502918_21	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-1502918_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1502918_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1502918_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1502918_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1502918_21	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1502918_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1502918_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1502918_22	UniRef90	UniRef90_UPI000DE4FA1A	phage portal protein	NA
UHGV-1502918_22	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-1502918_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1502918_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1502918_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1502918_23	UniRef90	UniRef90_R6PBF8	Phage putative head morphogenesis protein SPP1 gp7 family	NA
UHGV-1502918_23	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1502918_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1502918_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1502918_23	COG	COG2369	NA	NA
UHGV-1502918_23	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-1502918_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1502918_25	UniRef90	UniRef90_UPI001C013BCC	phage scaffolding protein	NA
UHGV-1502918_25	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-1502918_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1502918_25	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1502918_26	PHROG	phrog_247	major head protein	head and packaging
UHGV-1502918_26	UniRef90	UniRef90_UPI000C089D46	phage coat protein	NA
UHGV-1502918_26	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-1502918_26	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1502918_26	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1502918_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1502918_27	UniRef90	UniRef90_A0A8F2D6U0	Phage head-tail connector protein	NA
UHGV-1502918_27	eggNOG-mapper	1567012.A0A0A7RTF6_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-1502918_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1502918_27	Structural annotation	PF05135	NA	NA
UHGV-1502918_28	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1502918_28	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-1502918_28	eggNOG-mapper	1408823.AXUS01000024_gene2719	NA	NA
UHGV-1502918_28	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1502918_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1502918_29	UniRef90	UniRef90_A0A8B2WXM8	HK97 gp10 family phage protein	NA
UHGV-1502918_29	eggNOG-mapper	608534.GCWU000341_02289	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1502918_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1502918_29	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1502918_30	PHROG	phrog_525	NA	unknown function
UHGV-1502918_30	UniRef90	UniRef90_T3DEM0	Putative phage protein	NA
UHGV-1502918_30	eggNOG-mapper	1151292.QEW_1340	NA	NA
UHGV-1502918_30	Pfam	PF20765	NA	DUF6838
UHGV-1502918_30	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1502918_31	PHROG	phrog_966	NA	unknown function
UHGV-1502918_31	UniRef90	UniRef90_T3DFM8	Putative phage protein	NA
UHGV-1502918_31	eggNOG-mapper	1195236.CTER_3998	NA	NA
UHGV-1502918_32	PHROG	phrog_279	tail sheath	tail
UHGV-1502918_32	UniRef90	UniRef90_UPI000DE1D5A3	phage tail sheath family protein	NA
UHGV-1502918_32	eggNOG-mapper	1029718.SFBM_0128	Phage tail sheath protein beta-sandwich domain	NA
UHGV-1502918_32	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1502918_32	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1502918_32	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1502918_32	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1502918_33	PHROG	phrog_365	tail protein	tail
UHGV-1502918_33	UniRef90	UniRef90_A0A2K1EF16	Phage portal protein	NA
UHGV-1502918_33	eggNOG-mapper	1121121.KB894312_gene3149	Phage portal protein	NA
UHGV-1502918_33	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1502918_33	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1502918_34	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1502918_34	UniRef90	UniRef90_UPI00101B7B80	XkdN-like protein	NA
UHGV-1502918_34	eggNOG-mapper	768704.Desmer_3279	PFAM Phage XkdN-like protein	NA
UHGV-1502918_34	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1502918_34	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1502918_35	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1502918_35	UniRef90	UniRef90_A0A3P3UCY9	Tail tape measure protein	NA
UHGV-1502918_35	eggNOG-mapper	1118054.CAGW01000102_gene4711	tape measure	NA
UHGV-1502918_35	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1502918_35	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1502918_35	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1502918_35	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1502918_36	PHROG	phrog_806	NA	unknown function
UHGV-1502918_36	eggNOG-mapper	397291.C804_03822	NA	NA
UHGV-1502918_36	Pfam	PF11611	NA	DUF4352
UHGV-1502918_36	Structural annotation	PF11611, MF_00791, TIGR04209, COG2967	NA	NA
UHGV-1502918_37	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1502918_37	PHROG	phrog_380	endolysin	lysis
UHGV-1502918_37	UniRef90	UniRef90_N1ZL66	LysM domain-containing protein	NA
UHGV-1502918_37	eggNOG-mapper	97138.C820_00994	Lysin motif	NA
UHGV-1502918_37	Pfam	PF01476	LysM domain	LysM
UHGV-1502918_37	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1502918_38	PHROG	phrog_400	tail protein	tail
UHGV-1502918_38	UniRef90	UniRef90_A0A7X8EVX2	Hydrolase	NA
UHGV-1502918_38	eggNOG-mapper	756499.Desde_1099	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1502918_38	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1502918_38	Pfam	PF06725	3D domain	3D
UHGV-1502918_38	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1502918_39	PHROG	phrog_579	NA	unknown function
UHGV-1502918_39	UniRef90	UniRef90_A0A5S9MBP0	Phage-like element PBSX protein XkdR	NA
UHGV-1502918_39	eggNOG-mapper	1151292.QEW_1352	NA	NA
UHGV-1502918_39	Pfam	PF10844	NA	DUF2577
UHGV-1502918_39	Structural annotation	PF10844, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-1502918_40	PHROG	phrog_120	baseplate protein	tail
UHGV-1502918_40	UniRef90	UniRef90_A0A7X5DCS6	NA	NA
UHGV-1502918_40	eggNOG-mapper	97138.C820_00243	NA	NA
UHGV-1502918_40	Pfam	PF10934	NA	DUF2634
UHGV-1502918_40	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1502918_40	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1502918_41	PHROG	phrog_6	baseplate protein	tail
UHGV-1502918_41	UniRef90	UniRef90_R6PLC6	Baseplate J family protein	NA
UHGV-1502918_41	eggNOG-mapper	696281.Desru_1323	phage Mu protein gp47-like protein	NA
UHGV-1502918_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1502918_41	COG	COG3299	NA	NA
UHGV-1502918_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1502918_42	PHROG	phrog_521	tail protein	tail
UHGV-1502918_42	UniRef90	UniRef90_UPI00048C2534	NA	NA
UHGV-1502918_42	eggNOG-mapper	1089548.KI783301_gene2598	NA	NA
UHGV-1502918_42	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1502918_42	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1502918_42	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1502918_43	PHROG	phrog_19695	NA	unknown function
UHGV-1502918_43	Structural annotation	PF10651	NA	NA
UHGV-1502918_44	PHROG	phrog_18805	NA	unknown function
UHGV-1502918_44	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1502918_44	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1502918_44	Structural annotation	PF13306, NF041351	NA	NA
UHGV-1502918_46	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1502918_47	PHROG	phrog_199	holin	lysis
UHGV-1502918_47	UniRef90	UniRef90_A0A414P9N2	Holin	NA
UHGV-1502918_47	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-1502918_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1502918_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1502918_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1502918_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1502918_48	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1502918_48	PHROG	phrog_9611	endolysin	lysis
UHGV-1502918_48	UniRef90	UniRef90_A0A3D4VSM4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1502918_48	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-1502918_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1502918_48	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1502918_48	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1502918_49	eggNOG-mapper	1508644.SFBmNL_00103	NA	NA
UHGV-1502918_50	Structural annotation	PF01345, NF041894	NA	NA
UHGV-1502918_51	eggNOG-mapper	1508644.SFBmNL_00105	NA	NA
UHGV-1502918_51	Structural annotation	PF04381, MF_00194, NF001461, COG2974	NA	NA