UHGV-1503296

Genome information

Genome length 33,265 bps

CDS count 59

Completeness 90.36% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-1503296
vOTU ID	vOTU-064662
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229734
BioSample	SAMN06348175
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.83
Jumbo phage	No

Genome content
Genome length	33,265 bps
GC content	58.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.98%
Average CDS length	515.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1503296_1	PHROG	phrog_1066	NA	unknown function
UHGV-1503296_1	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-1503296_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1503296_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1503296_2	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1503296_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1503296_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1503296_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1503296_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1503296_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1503296_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1503296_3	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-1503296_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1503296_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1503296_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1503296_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1503296_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1503296_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1503296_4	UniRef90	UniRef90_R9TLM7	Peptidase S14 ClpP	NA
UHGV-1503296_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1503296_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1503296_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1503296_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1503296_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1503296_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-1503296_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1503296_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1503296_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1503296_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1503296_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1503296_6	PHROG	phrog_5223	neck protein	connector
UHGV-1503296_6	UniRef90	UniRef90_UPI000BEC4770	head-tail connector protein	NA
UHGV-1503296_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1503296_7	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-1503296_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1503296_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1503296_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1503296_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1503296_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1503296_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1503296_8	Structural annotation	PF05657	NA	NA
UHGV-1503296_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1503296_9	Structural annotation	TIGR01725	NA	NA
UHGV-1503296_10	PHROG	phrog_88	major tail protein	tail
UHGV-1503296_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1503296_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1503296_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1503296_10	COG	COG5492	NA	NA
UHGV-1503296_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1503296_11	Structural annotation	PF11836	NA	NA
UHGV-1503296_12	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-1503296_12	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1503296_12	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-1503296_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1503296_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1503296_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1503296_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1503296_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1503296_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1503296_14	PHROG	phrog_26795	NA	unknown function
UHGV-1503296_14	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1503296_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1503296_15	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-1503296_17	Structural annotation	PF10651	NA	NA
UHGV-1503296_19	PHROG	phrog_10898	NA	unknown function
UHGV-1503296_19	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-1503296_19	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-1503296_19	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-1503296_19	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-1503296_20	Structural annotation	PF16408, NF033510	NA	NA
UHGV-1503296_21	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1503296_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1503296_22	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1503296_22	UniRef90	UniRef90_UPI000834AF98	NA	NA
UHGV-1503296_22	eggNOG-mapper	742738.HMPREF9460_02534	NA	NA
UHGV-1503296_22	Pfam	PF19789	NA	DUF6273
UHGV-1503296_22	Structural annotation	PF19789	NA	NA
UHGV-1503296_24	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-1503296_24	Structural annotation	PF10618	NA	NA
UHGV-1503296_28	PHROG	phrog_6918	holin	lysis
UHGV-1503296_28	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-1503296_28	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1503296_28	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1503296_28	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1503296_29	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-1503296_29	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1503296_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1503296_29	Structural annotation	NF033743	NA	NA
UHGV-1503296_31	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-1503296_31	PHROG	phrog_9764	NA	unknown function
UHGV-1503296_31	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-1503296_31	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-1503296_31	PADLOC	AbiQ	AbiQ	Abi
UHGV-1503296_31	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-1503296_31	Structural annotation	PF13958	NA	NA
UHGV-1503296_34	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-1503296_34	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1503296_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1503296_35	PHROG	phrog_95	integrase	integration and excision
UHGV-1503296_35	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-1503296_35	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-1503296_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1503296_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-1503296_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1503296_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1503296_35	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1503296_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1503296_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1503296_36	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1503296_36	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1503296_37	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-1503296_37	eggNOG-mapper	1378168.N510_02510	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-1503296_37	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-1503296_37	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1503296_38	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-1503296_38	Structural annotation	PF02805	NA	NA
UHGV-1503296_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1503296_40	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1503296_40	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-1503296_40	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-1503296_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1503296_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1503296_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1503296_43	Structural annotation	PF10548	NA	NA
UHGV-1503296_44	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1503296_44	UniRef90	UniRef90_A0A1Y3RFS1	XRE family transcriptional regulator	NA
UHGV-1503296_46	Structural annotation	PF05082	NA	NA
UHGV-1503296_50	Pfam	PF04448	NA	DUF551
UHGV-1503296_51	PHROG	phrog_3136	NA	unknown function
UHGV-1503296_51	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-1503296_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1503296_51	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1503296_52	PHROG	phrog_5781	NA	unknown function
UHGV-1503296_52	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-1503296_52	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-1503296_52	Pfam	PF14359	NA	DUF4406
UHGV-1503296_52	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1503296_52	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-1503296_54	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1503296_54	UniRef90	UniRef90_UPI001B11004B	Lar family restriction alleviation protein	NA
UHGV-1503296_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1503296_54	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1503296_56	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1503296_56	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1503296_56	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-1503296_56	Pfam	PF06356	NA	DUF1064
UHGV-1503296_56	Structural annotation	PF06356	NA	NA
UHGV-1503296_58	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1503296_58	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA