UHGV-1503717

Genome information

vOTU vOTU-062067

Genome length 33,227 bps

CDS count 48

Completeness 91.97% (high-quality)

geNomad score 0.9656

Prediction confidence Confident

Genome information
Genome ID	UHGV-1503717
vOTU ID	vOTU-062067
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229524
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9656
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.67
Jumbo phage	No

Genome content
Genome length	33,227 bps
GC content	34.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.29%
Average CDS length	648.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1503717_1	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1503717_1	UniRef90	UniRef90_UPI000DA5F351	Lar family restriction alleviation protein	NA
UHGV-1503717_1	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-1503717_1	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1503717_1	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1503717_1	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1503717_2	Structural annotation	PF11061	NA	NA
UHGV-1503717_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1503717_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1503717_3	UniRef90	UniRef90_UPI001D13B790	single-stranded DNA-binding protein	NA
UHGV-1503717_3	eggNOG-mapper	518637.EUBIFOR_00985	Single-stranded DNA-binding protein	NA
UHGV-1503717_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1503717_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1503717_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1503717_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1503717_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1503717_4	PHROG	phrog_236	nucleotide kinase	other
UHGV-1503717_4	UniRef90	UniRef90_UPI001D150D86	NA	NA
UHGV-1503717_4	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1503717_4	Pfam	PF11753	NA	DUF3310
UHGV-1503717_4	Structural annotation	PF11753	NA	NA
UHGV-1503717_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1503717_6	Structural annotation	TIGR01637	NA	NA
UHGV-1503717_8	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1503717_8	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-1503717_8	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-1503717_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1503717_10	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1503717_10	UniRef90	UniRef90_UPI001D1546DE	P27 family phage terminase small subunit	NA
UHGV-1503717_10	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-1503717_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1503717_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1503717_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1503717_11	UniRef90	UniRef90_UPI001D14D10A	terminase large subunit	NA
UHGV-1503717_11	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-1503717_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1503717_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1503717_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1503717_11	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1503717_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1503717_12	UniRef90	UniRef90_UPI001D13A36B	phage portal protein	NA
UHGV-1503717_12	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-1503717_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1503717_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1503717_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1503717_12	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1503717_13	KOfam	K06904	NA	NA
UHGV-1503717_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1503717_13	UniRef90	UniRef90_UPI001D141099	HK97 family phage prohead protease	NA
UHGV-1503717_13	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-1503717_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1503717_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1503717_13	COG	COG3740	Phage head maturation protease	NA
UHGV-1503717_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1503717_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1503717_14	UniRef90	UniRef90_UPI001D139C25	phage major capsid protein	NA
UHGV-1503717_14	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-1503717_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1503717_14	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1503717_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1503717_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1503717_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1503717_15	PHROG	phrog_2550	NA	unknown function
UHGV-1503717_15	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-1503717_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1503717_16	PHROG	phrog_19734	NA	unknown function
UHGV-1503717_16	UniRef90	UniRef90_UPI001D15BD22	head-tail adaptor protein	NA
UHGV-1503717_16	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-1503717_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1503717_17	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-1503717_17	Structural annotation	PF05657	NA	NA
UHGV-1503717_18	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1503717_18	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1503717_18	Structural annotation	TIGR01725	NA	NA
UHGV-1503717_19	PHROG	phrog_88	major tail protein	tail
UHGV-1503717_19	UniRef90	UniRef90_A0A3E3E439	Phage tail protein	NA
UHGV-1503717_19	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1503717_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1503717_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1503717_22	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1503717_22	PHROG	phrog_23464	NA	unknown function
UHGV-1503717_22	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1503717_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1503717_22	Structural annotation	COG5280	NA	NA
UHGV-1503717_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1503717_23	UniRef90	UniRef90_A0A3E3E586	Phage tail protein	NA
UHGV-1503717_23	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-1503717_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1503717_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1503717_24	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1503717_24	UniRef90	UniRef90_UPI001D158A25	phage tail protein	NA
UHGV-1503717_24	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1503717_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1503717_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1503717_24	COG	COG4926	Phage-related protein	NA
UHGV-1503717_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1503717_25	PHROG	phrog_8781	endolysin	lysis
UHGV-1503717_25	UniRef90	UniRef90_A0A3A6D9Z4	Peptidase C51 domain-containing protein	NA
UHGV-1503717_25	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-1503717_25	Pfam	PF05257	CHAP domain	CHAP
UHGV-1503717_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1503717_25	Structural annotation	PF05382, COG0791	NA	NA
UHGV-1503717_26	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-1503717_26	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-1503717_27	PHROG	phrog_1129	holin	lysis
UHGV-1503717_27	UniRef90	UniRef90_UPI001C263697	phage holin family protein	NA
UHGV-1503717_27	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1503717_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1503717_27	Structural annotation	PF06946	NA	NA
UHGV-1503717_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1503717_29	PHROG	phrog_3088	amidase	lysis
UHGV-1503717_29	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1503717_29	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1503717_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1503717_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1503717_29	Structural annotation	COG5632	NA	NA
UHGV-1503717_30	KOfam	K14059	int; integrase	NA
UHGV-1503717_30	PHROG	phrog_1	integrase	integration and excision
UHGV-1503717_30	UniRef90	UniRef90_UPI001D14D7BA	site-specific integrase	NA
UHGV-1503717_30	eggNOG-mapper	1123313.ATUT01000003_gene814	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1503717_30	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1503717_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1503717_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1503717_30	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1503717_31	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1503717_31	PHROG	phrog_8036	NA	unknown function
UHGV-1503717_31	UniRef90	UniRef90_A0A354ME12	DNA damage-inducible protein D	NA
UHGV-1503717_31	eggNOG-mapper	1122173.AXVL01000018_gene461	SOS response	NA
UHGV-1503717_31	AcrCatalog	cluster_17589	NA	NA
UHGV-1503717_31	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1503717_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1503717_31	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1503717_31	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1503717_31	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1503717_32	UniRef90	UniRef90_UPI001D146AF0	PH domain-containing protein	NA
UHGV-1503717_32	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-1503717_34	PHROG	phrog_3732	NA	unknown function
UHGV-1503717_34	UniRef90	UniRef90_UPI00142FF33D	NA	NA
UHGV-1503717_34	eggNOG-mapper	521460.Athe_2468	NA	NA
UHGV-1503717_34	Pfam	PF12686	NA	DUF3800
UHGV-1503717_34	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-1503717_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1503717_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1503717_36	UniRef90	UniRef90_UPI001C38F4F4	helix-turn-helix domain-containing protein	NA
UHGV-1503717_36	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-1503717_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1503717_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1503717_36	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-1503717_37	UniRef90	UniRef90_UPI001C38F278	helix-turn-helix domain-containing protein	NA
UHGV-1503717_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1503717_41	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1503717_41	UniRef90	UniRef90_UPI001D14D4CB	conserved phage C-terminal domain-containing protein	NA
UHGV-1503717_41	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-1503717_41	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1503717_41	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1503717_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1503717_41	Structural annotation	PF09524, PF07106, MF_01177, TIGR02220, TIGR01610, COG0640	NA	NA
UHGV-1503717_42	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1503717_42	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1503717_42	UniRef90	UniRef90_UPI001D13CF1D	DNA polymerase III subunit beta	NA
UHGV-1503717_42	eggNOG-mapper	518637.EUBIFOR_01905	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1503717_42	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1503717_42	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1503717_42	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1503717_42	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1503717_42	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1503717_42	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1503717_43	PHROG	phrog_7445	NA	unknown function
UHGV-1503717_43	UniRef90	UniRef90_UPI001D142670	PcfK-like family protein	NA
UHGV-1503717_43	eggNOG-mapper	1122931.AUAE01000005_gene3272	PcfK-like protein	NA
UHGV-1503717_43	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1503717_43	Structural annotation	PF14058	NA	NA
UHGV-1503717_44	PHROG	phrog_8470	NA	unknown function
UHGV-1503717_44	UniRef90	UniRef90_UPI001D1558B6	PcfJ domain-containing protein	NA
UHGV-1503717_44	eggNOG-mapper	1232449.BAHV02000018_gene1540	PcfJ-like protein	NA
UHGV-1503717_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1503717_44	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1503717_46	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1503717_46	PHROG	phrog_1	integrase	integration and excision
UHGV-1503717_46	UniRef90	UniRef90_UPI001D156F0D	tyrosine-type recombinase/integrase	NA
UHGV-1503717_46	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-1503717_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1503717_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1503717_46	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA