UHGV-1503899

Genome information

Genome length 35,236 bps

CDS count 56

Completeness 98.01% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1503899
vOTU ID	vOTU-060644
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0240075
BioSample	SAMEA2738100
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.23
Jumbo phage	No

Genome content
Genome length	35,236 bps
GC content	65.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.42%
Average CDS length	583.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1503899_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1503899_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1503899_1	UniRef90	UniRef90_A0A0V8RQ02	Single-stranded DNA-binding protein	NA
UHGV-1503899_1	eggNOG-mapper	1321775.HMPREF1980_01328	Single-stranded DNA-binding protein	NA
UHGV-1503899_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1503899_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1503899_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1503899_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1503899_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1503899_2	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1503899_2	UniRef90	UniRef90_A0A117IC21	Gp64	NA
UHGV-1503899_2	eggNOG-mapper	1287475.HMPREF1650_04280	crossover junction endodeoxyribonuclease activity	NA
UHGV-1503899_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1503899_2	Structural annotation	NF007305, COG4570	NA	NA
UHGV-1503899_4	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-1503899_4	UniRef90	UniRef90_A0A0M9UKU7	DNA-cytosine methyltransferase	NA
UHGV-1503899_4	eggNOG-mapper	1343740.M271_29590	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1503899_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1503899_5	eggNOG-mapper	1566993.A0A1B1FBJ0_9CAUD	methyltransferase activity	NA
UHGV-1503899_6	PHROG	phrog_464	NA	unknown function
UHGV-1503899_6	UniRef90	UniRef90_A0A2P1CIA2	NA	NA
UHGV-1503899_6	eggNOG-mapper	471856.Jden_2159	NA	NA
UHGV-1503899_6	Pfam	PF14216	NA	DUF4326
UHGV-1503899_6	Structural annotation	PF14216	NA	NA
UHGV-1503899_8	UniRef90	UniRef90_X6PWR3	Putative lipoprotein	NA
UHGV-1503899_8	Structural annotation	PF08410	NA	NA
UHGV-1503899_9	Structural annotation	NF004927	NA	NA
UHGV-1503899_10	Structural annotation	PF21611, NF038178	NA	NA
UHGV-1503899_12	Structural annotation	PF14282	NA	NA
UHGV-1503899_13	Structural annotation	PF16397, NF033845	NA	NA
UHGV-1503899_16	UniRef90	UniRef90_A0A0V8RQF5	HTH_17 domain-containing protein	NA
UHGV-1503899_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1503899_16	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1503899_18	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1503899_18	UniRef90	UniRef90_A0A0V8RQD4	HTH cro/C1-type domain-containing protein	NA
UHGV-1503899_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1503899_19	UniRef90	UniRef90_A0A0V8RPW3	HTH cro/C1-type domain-containing protein	NA
UHGV-1503899_19	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1503899_20	eggNOG-mapper	151537.Q77JL4_9CAUD	NA	NA
UHGV-1503899_21	KOfam	K14059	int; integrase	NA
UHGV-1503899_21	PHROG	phrog_1	integrase	integration and excision
UHGV-1503899_21	UniRef90	UniRef90_X6PZB2	Site-specific recombinase, phage integrase family	NA
UHGV-1503899_21	eggNOG-mapper	883077.HMPREF9241_01717	Belongs to the 'phage' integrase family	NA
UHGV-1503899_21	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1503899_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1503899_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1503899_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1503899_22	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1503899_22	PHROG	phrog_17803	phosphodiesterase	other
UHGV-1503899_22	UniRef90	UniRef90_UPI000660BBAC	glycerophosphodiester phosphodiesterase	NA
UHGV-1503899_22	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-1503899_22	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1503899_22	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-1503899_23	PHROG	phrog_30808	NA	unknown function
UHGV-1503899_24	PHROG	phrog_28842	NA	unknown function
UHGV-1503899_24	Structural annotation	PF08400, TIGR04134, COG3126	NA	NA
UHGV-1503899_25	PHROG	phrog_15808	NA	unknown function
UHGV-1503899_25	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1503899_26	eggNOG-mapper	525246.HMPREF0058_1258	NA	NA
UHGV-1503899_27	PHROG	phrog_21825	endolysin	lysis
UHGV-1503899_27	UniRef90	UniRef90_A0A0V8RPY9	Peptidase C51 domain-containing protein	NA
UHGV-1503899_27	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1503899_27	Pfam	PF05257	CHAP domain	CHAP
UHGV-1503899_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1503899_27	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1503899_29	PHROG	phrog_31345	NA	unknown function
UHGV-1503899_29	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1503899_30	PHROG	phrog_32674	NA	unknown function
UHGV-1503899_30	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1503899_31	PHROG	phrog_1887	tail protein	tail
UHGV-1503899_31	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1503899_31	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1503899_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1503899_32	PHROG	phrog_30446	NA	unknown function
UHGV-1503899_32	Structural annotation	PF00629, PF06995, NF033675, TIGR01633, COG3499	NA	NA
UHGV-1503899_33	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1503899_33	PHROG	phrog_971	endolysin	lysis
UHGV-1503899_33	UniRef90	UniRef90_A0A0V8RQD3	NlpC/P60 domain-containing protein	NA
UHGV-1503899_33	eggNOG-mapper	521393.JH806633_gene1285	tape measure	NA
UHGV-1503899_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1503899_33	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1503899_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1503899_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1503899_33	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1503899_35	PHROG	phrog_24495	NA	unknown function
UHGV-1503899_37	PHROG	phrog_476	major tail protein	tail
UHGV-1503899_37	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1503899_37	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1503899_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1503899_38	PHROG	phrog_37847	NA	unknown function
UHGV-1503899_38	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1503899_39	PHROG	phrog_16886	NA	unknown function
UHGV-1503899_39	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1503899_40	PHROG	phrog_501	head closure Hc1	connector
UHGV-1503899_40	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1503899_41	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1503899_41	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1503899_41	Structural annotation	TIGR02215	NA	NA
UHGV-1503899_43	PHROG	phrog_267	major head protein	head and packaging
UHGV-1503899_43	UniRef90	UniRef90_A0A7D0KIS5	Major capsid protein-like protein	NA
UHGV-1503899_43	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1503899_43	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1503899_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1503899_44	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1503899_44	UniRef90	UniRef90_Q9ZX69	Scaffolding protein	NA
UHGV-1503899_44	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-1503899_45	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1503899_45	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-1503899_45	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1503899_46	eggNOG-mapper	76636.JOEC01000001_gene1132	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1503899_47	PHROG	phrog_104	portal protein	head and packaging
UHGV-1503899_47	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-1503899_47	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1503899_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1503899_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1503899_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1503899_48	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1503899_48	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1503899_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1503899_48	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1503899_49	PHROG	phrog_226	minor tail protein	tail
UHGV-1503899_49	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1503899_49	eggNOG-mapper	1121353.H924_07235	NA	NA
UHGV-1503899_50	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1503899_50	UniRef90	UniRef90_A0A6N0Y8E5	DNA primase	NA
UHGV-1503899_50	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1503899_50	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1503899_50	Structural annotation	PF09250	NA	NA
UHGV-1503899_52	PHROG	phrog_908	NA	unknown function
UHGV-1503899_52	UniRef90	UniRef90_A0A0V8RQH7	HTH merR-type domain-containing protein	NA
UHGV-1503899_52	eggNOG-mapper	1237500.ANBA01000028_gene4891	NA	NA
UHGV-1503899_52	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-1503899_54	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1503899_54	UniRef90	UniRef90_A0A7H2BGE1	HNH endonuclease	NA
UHGV-1503899_54	eggNOG-mapper	1273125.Rrhod_1344	HNH endonuclease	NA
UHGV-1503899_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1503899_54	Structural annotation	PF20024	NA	NA
UHGV-1503899_56	COG	COG0629	Single-stranded DNA-binding protein	NA