UHGV-1504178

Genome information

Genome length 35,228 bps

CDS count 51

Completeness 91.68% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1504178
vOTU ID	vOTU-080988
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239990
BioSample	SAMN06112094
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.04
Jumbo phage	No

Genome content
Genome length	35,228 bps
GC content	43.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.67%
Average CDS length	665.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1504178_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1504178_2	PHROG	phrog_6745	endolysin	lysis
UHGV-1504178_2	UniRef90	UniRef90_A0A417AND4	CHAP domain-containing protein	NA
UHGV-1504178_2	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-1504178_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1504178_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-1504178_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1504178_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1504178_2	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-1504178_3	PHROG	phrog_443	holin	lysis
UHGV-1504178_3	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-1504178_3	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-1504178_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1504178_3	Structural annotation	PF16945	NA	NA
UHGV-1504178_4	PHROG	phrog_937	hemolysin	other
UHGV-1504178_4	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-1504178_5	PHROG	phrog_1382	NA	unknown function
UHGV-1504178_5	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-1504178_6	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-1504178_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1504178_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1504178_7	UniRef90	UniRef90_A0A417ANK1	Reverse transcriptase	NA
UHGV-1504178_7	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1504178_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1504178_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1504178_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1504178_7	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-1504178_8	PHROG	phrog_17147	NA	unknown function
UHGV-1504178_8	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-1504178_8	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-1504178_10	PHROG	phrog_18444	NA	unknown function
UHGV-1504178_10	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-1504178_11	PHROG	phrog_9886	NA	unknown function
UHGV-1504178_11	UniRef90	UniRef90_A0A417PG56	Peptidase S74 domain-containing protein	NA
UHGV-1504178_11	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-1504178_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1504178_11	COG	COG4926	Phage-related protein	NA
UHGV-1504178_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1504178_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1504178_12	UniRef90	UniRef90_UPI00148B3121	phage tail family protein	NA
UHGV-1504178_12	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-1504178_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1504178_12	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1504178_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1504178_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1504178_13	UniRef90	UniRef90_A0A417ANK5	Phage tail tape measure protein	NA
UHGV-1504178_13	eggNOG-mapper	1235799.C818_00430	Phage-related minor tail protein	NA
UHGV-1504178_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1504178_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1504178_13	COG	COG5283	Phage-related tail protein	NA
UHGV-1504178_13	Structural annotation	PF10145, COG5280	NA	NA
UHGV-1504178_14	PHROG	phrog_3033	NA	unknown function
UHGV-1504178_14	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1504178_14	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-1504178_15	PHROG	phrog_709	NA	unknown function
UHGV-1504178_15	eggNOG-mapper	1122146.AUHP01000010_gene1064	NA	NA
UHGV-1504178_15	Structural annotation	PF11836	NA	NA
UHGV-1504178_16	PHROG	phrog_88	major tail protein	tail
UHGV-1504178_16	UniRef90	UniRef90_A0A417ANR0	Phage tail protein	NA
UHGV-1504178_16	eggNOG-mapper	411490.ANACAC_00732	phage major tail protein, phi13 family	NA
UHGV-1504178_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1504178_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1504178_17	PHROG	phrog_78	tail terminator	connector
UHGV-1504178_17	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-1504178_17	Structural annotation	PF20765	NA	NA
UHGV-1504178_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1504178_18	UniRef90	UniRef90_A0A417PG70	HK97 gp10 family phage protein	NA
UHGV-1504178_18	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1504178_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1504178_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1504178_19	PHROG	phrog_19734	NA	unknown function
UHGV-1504178_19	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1504178_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1504178_20	PHROG	phrog_749	NA	unknown function
UHGV-1504178_20	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1504178_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1504178_21	UniRef90	UniRef90_A0A417PG62	Phage major capsid protein	NA
UHGV-1504178_21	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1504178_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1504178_21	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1504178_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1504178_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1504178_21	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1504178_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1504178_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1504178_22	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1504178_22	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1504178_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1504178_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1504178_22	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1504178_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1504178_23	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-1504178_23	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-1504178_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1504178_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1504178_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1504178_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1504178_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1504178_24	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-1504178_24	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1504178_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1504178_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1504178_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1504178_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1504178_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1504178_25	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-1504178_25	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-1504178_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1504178_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1504178_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504178_26	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-1504178_26	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-1504178_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1504178_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1504178_27	PHROG	phrog_1315	NA	unknown function
UHGV-1504178_28	PHROG	phrog_11237	NA	unknown function
UHGV-1504178_28	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-1504178_29	eggNOG-mapper	665950.HMPREF1025_02544	NA	NA
UHGV-1504178_30	PHROG	phrog_7566	NA	unknown function
UHGV-1504178_30	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1504178_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1504178_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1504178_32	UniRef90	UniRef90_A0A417ANN0	Single-stranded DNA-binding protein	NA
UHGV-1504178_32	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1504178_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1504178_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1504178_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1504178_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1504178_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1504178_33	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-1504178_33	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1504178_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1504178_33	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-1504178_37	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-1504178_37	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-1504178_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1504178_39	PHROG	phrog_15982	NA	unknown function
UHGV-1504178_39	UniRef90	UniRef90_A0A417ANM7	ParB domain-containing protein	NA
UHGV-1504178_39	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-1504178_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1504178_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1504178_39	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1504178_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1504178_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1504178_40	UniRef90	UniRef90_A0A417PG63	ParA family protein	NA
UHGV-1504178_40	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-1504178_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-1504178_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1504178_40	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1504178_42	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-1504178_42	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-1504178_42	COG	COG0328	Ribonuclease HI	NA
UHGV-1504178_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1504178_43	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-1504178_43	Structural annotation	PF01446	NA	NA
UHGV-1504178_46	eggNOG-mapper	1235792.C808_00637	NA	NA
UHGV-1504178_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504178_47	UniRef90	UniRef90_A0A417ANM8	NUMOD4 domain-containing protein	NA
UHGV-1504178_47	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-1504178_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1504178_47	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1504178_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1504178_47	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA