UHGV-1504429

Genome information

Genome length 56,590 bps

CDS count 75

Completeness 59.26% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-1504429
vOTU ID	vOTU-025565
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0324929
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.07
Jumbo phage	No

Genome content
Genome length	56,590 bps
GC content	46.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	87.45%
Average CDS length	661.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1504429_1	PHROG	phrog_874	NA	unknown function
UHGV-1504429_1	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-1504429_1	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1504429_3	PHROG	phrog_35807	NA	unknown function
UHGV-1504429_3	UniRef90	UniRef90_A0A173Z9Q2	DNA-directed RNA polymerase subunit beta	NA
UHGV-1504429_3	eggNOG-mapper	411477.PARMER_02078	RNA polymerase activity	NA
UHGV-1504429_3	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-1504429_3	Structural annotation	PF14902	NA	NA
UHGV-1504429_4	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-1504429_4	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-1504429_4	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1504429_4	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-1504429_6	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504429_6	UniRef90	UniRef90_A0A353E5D6	NA	NA
UHGV-1504429_6	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-1504429_6	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-1504429_6	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1504429_6	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-1504429_8	Structural annotation	COG3655	NA	NA
UHGV-1504429_9	Structural annotation	PF17457	NA	NA
UHGV-1504429_12	UniRef90	UniRef90_D1PE27	RepB family plasmid replication initiator protein	NA
UHGV-1504429_12	eggNOG-mapper	1235811.HMPREF0653_01552	Initiator RepB protein	NA
UHGV-1504429_12	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1504429_12	Structural annotation	PF20964, PF01051, NF038290, COG5527	NA	NA
UHGV-1504429_13	Structural annotation	PF03869, NF010302, COG3905	NA	NA
UHGV-1504429_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1504429_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1504429_14	UniRef90	UniRef90_A0A095Z6L5	AAA_31 domain-containing protein	NA
UHGV-1504429_14	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-1504429_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-1504429_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1504429_14	Structural annotation	PF13614, MF_00533, NF041283, COG1192	NA	NA
UHGV-1504429_16	Structural annotation	PF21441, MF_01911, TIGR02337, COG3432	NA	NA
UHGV-1504429_19	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-1504429_19	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1504429_19	UniRef90	UniRef90_U7V6E4	DNA ligase	NA
UHGV-1504429_19	eggNOG-mapper	1319815.HMPREF0202_02589	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-1504429_19	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-1504429_19	Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
UHGV-1504429_19	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1504429_19	Structural annotation	PF01653, PF03120, MF_01588, NF005932, COG0272	NA	NA
UHGV-1504429_20	Structural annotation	PF06289, COG1582	NA	NA
UHGV-1504429_23	Structural annotation	PF12857	NA	NA
UHGV-1504429_32	PHROG	phrog_37559	NA	unknown function
UHGV-1504429_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1504429_33	PHROG	phrog_5696	NA	unknown function
UHGV-1504429_33	UniRef90	UniRef90_A0A6L5XAE6	N-6 DNA methylase	NA
UHGV-1504429_33	eggNOG-mapper	552811.Dehly_0230	HsdM N-terminal domain	NA
UHGV-1504429_33	PADLOC	MTase_I_00004	Type I methyltransferase	RM
UHGV-1504429_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1504429_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1504429_33	Structural annotation	COG0286	NA	NA
UHGV-1504429_39	Structural annotation	PF08962	NA	NA
UHGV-1504429_40	eggNOG-mapper	1392488.JHZY01000004_gene1693	NA	NA
UHGV-1504429_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1504429_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1504429_41	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1504429_42	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504429_42	UniRef90	UniRef90_D5EXW4	Conserved domain protein	NA
UHGV-1504429_42	eggNOG-mapper	298338.Q5ULK0_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-1504429_42	Pfam	PF05265	NA	DUF723
UHGV-1504429_42	Structural annotation	PF04480, PF05265, NF007294, COG3727	NA	NA
UHGV-1504429_44	UniRef90	UniRef90_UPI00189F38B5	helix-turn-helix domain-containing protein	NA
UHGV-1504429_44	eggNOG-mapper	411477.PARMER_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1504429_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1504429_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1504429_44	Structural annotation	PF01381, MF_00535, NF000090, COG1476	NA	NA
UHGV-1504429_46	Structural annotation	PF18692, TIGR03066, NF007705	NA	NA
UHGV-1504429_48	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-1504429_48	PHROG	phrog_26616	lipoprotein	other
UHGV-1504429_48	Structural annotation	PF10043, NF008028, COG5544	NA	NA
UHGV-1504429_49	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1504429_49	PHROG	phrog_7	endolysin	lysis
UHGV-1504429_49	UniRef90	UniRef90_UPI000D10C356	lysozyme	NA
UHGV-1504429_49	eggNOG-mapper	762968.HMPREF9441_00560	lysozyme	NA
UHGV-1504429_49	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1504429_49	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1504429_49	HAMAP	MF_04110	Endolysin	NA
UHGV-1504429_49	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1504429_51	PHROG	phrog_5911	tail protein	tail
UHGV-1504429_51	eggNOG-mapper	470.IX87_01205	conjugation	NA
UHGV-1504429_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1504429_51	Structural annotation	PF04300, PF15425, PF21602, NF033675	NA	NA
UHGV-1504429_52	PHROG	phrog_3267	tail protein	tail
UHGV-1504429_52	UniRef90	UniRef90_R6DH83	Phage gp373 protein	NA
UHGV-1504429_52	eggNOG-mapper	1392486.JIAF01000004_gene2044	NA	NA
UHGV-1504429_52	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-1504429_53	PHROG	phrog_17422	NA	unknown function
UHGV-1504429_53	eggNOG-mapper	1392486.JIAF01000004_gene815	NA	NA
UHGV-1504429_58	Pfam	PF20459	NA	DUF6712
UHGV-1504429_58	Structural annotation	PF20459	NA	NA
UHGV-1504429_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1504429_60	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1504429_60	UniRef90	UniRef90_A0A255TPS1	Methyltransferase	NA
UHGV-1504429_60	eggNOG-mapper	483215.BACFIN_05771	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1504429_60	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1504429_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1504429_60	COG	COG0863	DNA modification methylase	NA
UHGV-1504429_60	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1504429_61	eggNOG-mapper	1235803.C825_03414	NA	NA
UHGV-1504429_61	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1504429_62	Structural annotation	PF13619	NA	NA
UHGV-1504429_65	PHROG	phrog_2087	NA	unknown function
UHGV-1504429_65	eggNOG-mapper	1410653.JHVC01000005_gene2495	NA	NA
UHGV-1504429_66	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1504429_66	UniRef90	UniRef90_R6U473	Gp142	NA
UHGV-1504429_66	eggNOG-mapper	1327935.A0A060AD14_9CAUD	NA	NA
UHGV-1504429_66	Structural annotation	COG1704	NA	NA
UHGV-1504429_68	UniRef90	UniRef90_A0A6I1S5I8	GNAT family N-acetyltransferase	NA
UHGV-1504429_68	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1504429_68	Structural annotation	PF13673, MF_02018, NF000487, COG3153	NA	NA
UHGV-1504429_70	Structural annotation	COG5475	NA	NA