UHGV-1504459

Genome information

Genome length 32,706 bps

CDS count 36

Completeness 79.26% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-1504459
vOTU ID	vOTU-036099
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0266542
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.16
Jumbo phage	No

Genome content
Genome length	32,706 bps
GC content	41.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.32%
Average CDS length	860.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1504459_1	PHROG	phrog_18860	NA	unknown function
UHGV-1504459_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1504459_2	PHROG	phrog_435	endolysin	lysis
UHGV-1504459_2	UniRef90	UniRef90_A0A6N3A5B7	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-1504459_2	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1504459_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1504459_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1504459_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1504459_3	PHROG	phrog_27828	NA	unknown function
UHGV-1504459_3	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-1504459_3	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-1504459_5	PHROG	phrog_22483	NA	unknown function
UHGV-1504459_5	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-1504459_5	eggNOG-mapper	706434.HMPREF9429_00509	NA	NA
UHGV-1504459_5	Structural annotation	PF17936, NF033814	NA	NA
UHGV-1504459_6	PHROG	phrog_1084	NA	unknown function
UHGV-1504459_6	Structural annotation	PF17813, NF038186	NA	NA
UHGV-1504459_7	PHROG	phrog_25213	NA	unknown function
UHGV-1504459_8	PHROG	phrog_2427	NA	unknown function
UHGV-1504459_9	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1504459_9	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-1504459_9	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-1504459_9	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1504459_9	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1504459_9	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-1504459_9	COG	COG1511	NA	NA
UHGV-1504459_9	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-1504459_10	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1504459_10	PHROG	phrog_329	minor tail protein	tail
UHGV-1504459_10	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-1504459_10	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-1504459_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1504459_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1504459_10	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-1504459_11	PHROG	phrog_18	minor tail protein	tail
UHGV-1504459_11	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-1504459_11	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-1504459_11	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1504459_11	COG	COG4672	Phage tail protein	NA
UHGV-1504459_11	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-1504459_12	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-1504459_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1504459_13	PHROG	phrog_22443	NA	unknown function
UHGV-1504459_13	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-1504459_13	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-1504459_13	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-1504459_13	COG	COG4913	NA	NA
UHGV-1504459_13	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-1504459_14	PHROG	phrog_27248	NA	unknown function
UHGV-1504459_15	PHROG	phrog_290	minor tail protein	tail
UHGV-1504459_15	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-1504459_15	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-1504459_15	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-1504459_15	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-1504459_16	PHROG	phrog_17431	NA	unknown function
UHGV-1504459_16	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-1504459_16	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1504459_17	PHROG	phrog_222	tail protein	tail
UHGV-1504459_17	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-1504459_17	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-1504459_17	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-1504459_18	PHROG	phrog_27032	NA	unknown function
UHGV-1504459_18	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-1504459_19	PHROG	phrog_122	head decoration	head and packaging
UHGV-1504459_19	UniRef90	UniRef90_UPI0007C895B4	NA	NA
UHGV-1504459_19	eggNOG-mapper	484770.UFO1_2460	NA	NA
UHGV-1504459_19	Pfam	PF09956	NA	DUF2190
UHGV-1504459_19	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-1504459_19	Structural annotation	PF09956, COG5471	NA	NA
UHGV-1504459_20	KOfam	K06904	NA	NA
UHGV-1504459_20	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-1504459_20	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-1504459_20	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-1504459_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1504459_20	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1504459_20	COG	COG3087	Cell division protein FtsN	NA
UHGV-1504459_20	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-1504459_21	PHROG	phrog_21	portal protein	head and packaging
UHGV-1504459_21	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-1504459_21	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-1504459_21	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-1504459_21	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-1504459_21	COG	COG5511	Phage capsid protein	NA
UHGV-1504459_21	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-1504459_22	PHROG	phrog_20307	NA	unknown function
UHGV-1504459_22	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-1504459_22	Structural annotation	PF19645, COG1382	NA	NA
UHGV-1504459_23	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-1504459_23	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-1504459_23	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-1504459_23	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-1504459_23	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-1504459_23	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-1504459_23	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-1504459_23	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-1504459_23	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-1504459_24	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-1504459_24	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-1504459_24	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-1504459_25	PHROG	phrog_1558	NA	unknown function
UHGV-1504459_25	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-1504459_25	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-1504459_25	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-1504459_26	PHROG	phrog_236	nucleotide kinase	other
UHGV-1504459_26	UniRef90	UniRef90_UPI00098A44D4	NA	NA
UHGV-1504459_26	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-1504459_26	Pfam	PF11753	NA	DUF3310
UHGV-1504459_26	Structural annotation	PF11753	NA	NA
UHGV-1504459_27	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1504459_27	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-1504459_27	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1504459_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1504459_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1504459_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1504459_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1504459_28	UniRef90	UniRef90_UPI001A5B77C0	ATP-binding protein	NA
UHGV-1504459_28	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-1504459_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1504459_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1504459_28	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1504459_29	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1504459_29	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-1504459_29	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-1504459_29	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1504459_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1504459_29	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-1504459_30	PHROG	phrog_29533	NA	unknown function
UHGV-1504459_31	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1504459_31	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-1504459_31	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-1504459_31	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1504459_31	Structural annotation	PF12706, MF_00457, NF041851, COG1234	NA	NA
UHGV-1504459_32	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1504459_32	UniRef90	UniRef90_S4U0C4	RecT protein-like protein	NA
UHGV-1504459_32	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-1504459_32	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1504459_33	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1504459_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1504459_33	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-1504459_33	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-1504459_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1504459_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1504459_33	COG	COG3617	Prophage antirepressor	NA
UHGV-1504459_33	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1504459_34	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1504459_34	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504459_34	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-1504459_34	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-1504459_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-1504459_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1504459_34	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1504459_35	PHROG	phrog_16315	NA	unknown function
UHGV-1504459_35	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-1504459_35	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-1504459_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1504459_35	Structural annotation	PF14284	NA	NA
UHGV-1504459_36	PHROG	phrog_29844	NA	unknown function