UHGV-1504611

Genome information

Genome length 56,894 bps

CDS count 103

Completeness 98.71% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-1504611
vOTU ID	vOTU-066848
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0325578
BioSample	SAMEA3664764
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.54
Jumbo phage	No

Genome content
Genome length	56,894 bps
GC content	47.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	103
CDS density	85.93%
Average CDS length	476.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1504611_2	PHROG	phrog_15768	NA	unknown function
UHGV-1504611_2	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-1504611_2	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-1504611_2	Pfam	PF19808	NA	DUF6291
UHGV-1504611_2	Structural annotation	PF19808	NA	NA
UHGV-1504611_3	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1504611_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1504611_3	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1504611_3	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1504611_7	Structural annotation	NF041588	NA	NA
UHGV-1504611_14	PHROG	phrog_30878	NA	unknown function
UHGV-1504611_15	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1504611_15	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1504611_15	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1504611_15	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1504611_17	Structural annotation	PF16677	NA	NA
UHGV-1504611_18	Pfam	PF04448	NA	DUF551
UHGV-1504611_18	Structural annotation	NF041588	NA	NA
UHGV-1504611_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1504611_23	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1504611_23	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1504611_23	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1504611_25	PHROG	phrog_35094	NA	unknown function
UHGV-1504611_25	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-1504611_27	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1504611_27	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-1504611_27	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1504611_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1504611_27	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1504611_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1504611_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1504611_28	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1504611_28	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1504611_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1504611_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1504611_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1504611_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1504611_28	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1504611_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1504611_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1504611_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1504611_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-1504611_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1504611_30	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-1504611_30	Structural annotation	PF13451	NA	NA
UHGV-1504611_32	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1504611_32	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-1504611_32	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1504611_32	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1504611_32	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1504611_32	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1504611_33	Structural annotation	PF14143	NA	NA
UHGV-1504611_35	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1504611_35	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1504611_36	Structural annotation	TIGR03826	NA	NA
UHGV-1504611_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1504611_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1504611_38	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-1504611_38	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-1504611_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1504611_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1504611_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1504611_39	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-1504611_39	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1504611_39	Structural annotation	TIGR03070	NA	NA
UHGV-1504611_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1504611_40	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-1504611_40	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1504611_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1504611_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1504611_44	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1504611_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1504611_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1504611_44	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1504611_45	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1504611_45	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1504611_45	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1504611_45	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1504611_45	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1504611_45	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1504611_45	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-1504611_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1504611_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1504611_48	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-1504611_48	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1504611_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-1504611_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1504611_48	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1504611_50	Structural annotation	PF01396	NA	NA
UHGV-1504611_51	Structural annotation	PF07878	NA	NA
UHGV-1504611_53	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-1504611_53	PHROG	phrog_3757	NA	unknown function
UHGV-1504611_53	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-1504611_53	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-1504611_53	PADLOC	IetA_00002	NA	ietAS
UHGV-1504611_53	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1504611_53	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-1504611_54	PHROG	phrog_4068	NA	unknown function
UHGV-1504611_54	Structural annotation	PF19757, NF038178	NA	NA
UHGV-1504611_56	Pfam	PF04448	NA	DUF551
UHGV-1504611_58	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1504611_59	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1504611_60	PHROG	phrog_16490	NA	unknown function
UHGV-1504611_60	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1504611_65	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-1504611_66	PHROG	phrog_15303	NA	unknown function
UHGV-1504611_68	KOfam	K07273	acm; lysozyme	NA
UHGV-1504611_68	PHROG	phrog_291	endolysin	lysis
UHGV-1504611_68	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-1504611_68	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-1504611_68	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1504611_68	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1504611_68	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-1504611_69	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1504611_69	UniRef90	UniRef90_A0A3B9GNF5	Metallophos domain-containing protein	NA
UHGV-1504611_69	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1504611_69	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1504611_69	Structural annotation	PF14582, MF_00905, NF008359, COG5555	NA	NA
UHGV-1504611_70	PHROG	phrog_18725	NA	unknown function
UHGV-1504611_70	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-1504611_70	COG	COG5492	NA	NA
UHGV-1504611_70	Structural annotation	PF15417, NF041539	NA	NA
UHGV-1504611_71	PHROG	phrog_13879	NA	unknown function
UHGV-1504611_71	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-1504611_71	Pfam	PF19789	NA	DUF6273
UHGV-1504611_71	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-1504611_72	PHROG	phrog_1194	NA	unknown function
UHGV-1504611_72	Pfam	PF20458	NA	DUF6711
UHGV-1504611_72	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1504611_73	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1504611_73	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1504611_73	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1504611_74	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1504611_75	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1504611_75	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1504611_75	Pfam	PF16478	NA	DUF5055
UHGV-1504611_75	Structural annotation	PF16478	NA	NA
UHGV-1504611_76	PHROG	phrog_158	major tail protein	tail
UHGV-1504611_76	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-1504611_76	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-1504611_76	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1504611_77	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1504611_78	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-1504611_79	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1504611_80	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1504611_80	Structural annotation	PF05135	NA	NA
UHGV-1504611_81	PHROG	phrog_29	major head protein	head and packaging
UHGV-1504611_81	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1504611_81	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-1504611_81	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1504611_81	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1504611_84	PHROG	phrog_64	portal protein	head and packaging
UHGV-1504611_84	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1504611_84	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1504611_84	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1504611_84	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1504611_86	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1504611_86	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1504611_86	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1504611_86	COG	COG5410	NA	NA
UHGV-1504611_86	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1504611_87	PHROG	phrog_3675	NA	unknown function
UHGV-1504611_87	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-1504611_87	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-1504611_87	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1504611_87	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1504611_88	Structural annotation	NF009949	NA	NA
UHGV-1504611_89	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1504611_89	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1504611_89	UniRef90	UniRef90_A0A3E2UAG1	Recombinase family protein	NA
UHGV-1504611_89	eggNOG-mapper	1280664.AUIX01000018_gene2067	Resolvase, N terminal domain	NA
UHGV-1504611_89	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1504611_89	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1504611_89	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-1504611_90	Structural annotation	PF20075	NA	NA
UHGV-1504611_92	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1504611_93	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1504611_93	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1504611_93	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-1504611_93	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-1504611_93	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1504611_93	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1504611_93	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1504611_93	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-1504611_95	PHROG	phrog_14275	NA	unknown function
UHGV-1504611_95	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-1504611_95	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1504611_95	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-1504611_98	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1504611_101	PHROG	phrog_1709	NA	unknown function
UHGV-1504611_101	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-1504611_103	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1504611_103	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1504611_103	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1504611_103	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1504611_103	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1504611_103	COG	COG0305	Replicative DNA helicase	NA