UHGV-1505222

Genome information

Genome length 38,121 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9573

Prediction confidence Confident

Genome information
Genome ID	UHGV-1505222
vOTU ID	vOTU-060023
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0270471
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9573
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	18.57
Jumbo phage	No

Genome content
Genome length	38,121 bps
GC content	66.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.16%
Average CDS length	790.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1505222_1	eggNOG-mapper	1064537.AGSO01000022_gene1083	NA	NA
UHGV-1505222_2	UniRef90	UniRef90_UPI0011778950	type IV secretion system protein	NA
UHGV-1505222_2	eggNOG-mapper	1064537.AGSO01000022_gene1084	NA	NA
UHGV-1505222_4	eggNOG-mapper	40571.JOEA01000009_gene3418	NA	NA
UHGV-1505222_5	KOfam	K02282	cpaE, tadZ; pilus assembly protein CpaE	NA
UHGV-1505222_5	UniRef90	UniRef90_A0A1H8YRI5	MinD-like ATPase involved in chromosome partitioning or flagellar assembly	NA
UHGV-1505222_5	eggNOG-mapper	222534.KB893717_gene1934	Involved in chromosome	NA
UHGV-1505222_5	COG	COG0455	MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase	NA
UHGV-1505222_6	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1505222_6	PHROG	phrog_669	endolysin	lysis
UHGV-1505222_6	UniRef90	UniRef90_UPI0015D5E159	NlpC/P60 family protein	NA
UHGV-1505222_6	eggNOG-mapper	649743.HMPREF0972_02589	Transglycosylase SLT domain	NA
UHGV-1505222_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1505222_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1505222_6	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1505222_7	eggNOG-mapper	435830.HMPREF0045_01479	NA	NA
UHGV-1505222_8	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1505222_8	UniRef90	UniRef90_UPI00096F6CA0	helix-turn-helix domain-containing protein	NA
UHGV-1505222_8	eggNOG-mapper	649743.HMPREF0972_02580	DNA-binding transcription factor activity	NA
UHGV-1505222_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1505222_8	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1505222_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1505222_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1505222_12	UniRef90	UniRef90_A0A1Q8W383	Single-stranded DNA-binding protein	NA
UHGV-1505222_12	eggNOG-mapper	562973.HMPREF0059_01205	Single-stranded DNA-binding protein	NA
UHGV-1505222_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1505222_12	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1505222_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1505222_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1505222_12	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1505222_13	PHROG	phrog_26098	NA	unknown function
UHGV-1505222_13	UniRef90	UniRef90_A0A3S9UNE5	HNH endonuclease	NA
UHGV-1505222_13	eggNOG-mapper	1029824.AFID01000001_gene1964	HNH endonuclease	NA
UHGV-1505222_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1505222_13	Structural annotation	COG1403	NA	NA
UHGV-1505222_16	PHROG	phrog_1467	NA	unknown function
UHGV-1505222_16	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1505222_17	UniRef90	UniRef90_A0A8F3ACZ3	Phosphoesterase	NA
UHGV-1505222_18	UniRef90	UniRef90_A0A087B4L9	Orf2	NA
UHGV-1505222_18	eggNOG-mapper	151537.Q77JL4_9CAUD	NA	NA
UHGV-1505222_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1505222_19	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1505222_19	UniRef90	UniRef90_U1RIA4	HNH endonuclease domain protein	NA
UHGV-1505222_19	eggNOG-mapper	1160718.SU9_10529	HNH nucleases	NA
UHGV-1505222_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1505222_20	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1505222_20	UniRef90	UniRef90_A0A2W4J7S9	DNA primase	NA
UHGV-1505222_20	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1505222_20	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1505222_20	Structural annotation	PF09250	NA	NA
UHGV-1505222_21	PHROG	phrog_226	minor tail protein	tail
UHGV-1505222_21	eggNOG-mapper	1121353.H924_07235	NA	NA
UHGV-1505222_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1505222_22	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1505222_22	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1505222_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1505222_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1505222_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-1505222_23	UniRef90	UniRef90_A0A8F2VUM9	Phage portal protein	NA
UHGV-1505222_23	eggNOG-mapper	563119.B5U4K2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1505222_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1505222_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1505222_24	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1505222_24	UniRef90	UniRef90_U1S0J5	CdiA_C domain-containing protein	NA
UHGV-1505222_24	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1505222_24	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1505222_24	Structural annotation	PF18451	NA	NA
UHGV-1505222_25	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1505222_25	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1505222_25	eggNOG-mapper	1278078.G419_25287	NA	NA
UHGV-1505222_26	PHROG	phrog_267	major head protein	head and packaging
UHGV-1505222_26	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1505222_26	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1505222_26	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1505222_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1505222_28	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1505222_28	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1505222_28	eggNOG-mapper	1097752.G8J7K9_9CAUD	NA	NA
UHGV-1505222_28	Structural annotation	TIGR02215	NA	NA
UHGV-1505222_29	PHROG	phrog_501	head closure Hc1	connector
UHGV-1505222_29	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1505222_30	PHROG	phrog_16886	NA	unknown function
UHGV-1505222_30	UniRef90	UniRef90_A0A853EGK4	HK97 gp10 family phage protein	NA
UHGV-1505222_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1505222_30	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1505222_31	PHROG	phrog_37847	NA	unknown function
UHGV-1505222_31	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1505222_32	PHROG	phrog_476	major tail protein	tail
UHGV-1505222_32	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1505222_32	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1505222_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1505222_34	PHROG	phrog_24495	NA	unknown function
UHGV-1505222_35	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-1505222_35	eggNOG-mapper	1101188.KI912155_gene1857	NA	NA
UHGV-1505222_36	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1505222_36	PHROG	phrog_971	endolysin	lysis
UHGV-1505222_36	UniRef90	UniRef90_A0A1Q8W367	NlpC/P60 domain-containing protein	NA
UHGV-1505222_36	eggNOG-mapper	521393.JH806633_gene1285	tape measure	NA
UHGV-1505222_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1505222_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1505222_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1505222_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1505222_36	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1505222_37	PHROG	phrog_30446	NA	unknown function
UHGV-1505222_38	PHROG	phrog_1887	tail protein	tail
UHGV-1505222_38	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1505222_38	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1505222_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1505222_39	PHROG	phrog_32674	NA	unknown function
UHGV-1505222_39	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1505222_41	PHROG	phrog_31345	NA	unknown function
UHGV-1505222_41	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1505222_42	KOfam	K07273	acm; lysozyme	NA
UHGV-1505222_42	PHROG	phrog_291	endolysin	lysis
UHGV-1505222_42	UniRef90	UniRef90_U1RWY8	Glycosyl hydrolase family 25	NA
UHGV-1505222_42	eggNOG-mapper	1125712.HMPREF1316_2132	CW_7 repeat	NA
UHGV-1505222_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1505222_42	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1505222_42	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1505222_43	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1505222_44	PHROG	phrog_3534	NA	unknown function
UHGV-1505222_44	eggNOG-mapper	883077.HMPREF9241_01714	NA	NA