UHGV-1505389

Genome information

Genome length 33,294 bps

CDS count 39

Completeness 86.50% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1505389
vOTU ID	vOTU-034937
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229886
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.55
Jumbo phage	No

Genome content
Genome length	33,294 bps
GC content	33.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	87.81%
Average CDS length	752.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1505389_1	KOfam	K14059	int; integrase	NA
UHGV-1505389_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1505389_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1505389_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1505389_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1505389_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1505389_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1505389_3	PHROG	phrog_1914	NA	unknown function
UHGV-1505389_3	UniRef90	UniRef90_A0A355V1W2	Peptidase_M78 domain-containing protein	NA
UHGV-1505389_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1505389_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1505389_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1505389_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1505389_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1505389_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1505389_4	UniRef90	UniRef90_UPI0019676706	helix-turn-helix transcriptional regulator	NA
UHGV-1505389_4	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-1505389_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1505389_4	COG	COG1426	NA	NA
UHGV-1505389_4	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-1505389_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1505389_5	UniRef90	UniRef90_R6CEZ8	DNA-binding helix-turn-helix protein	NA
UHGV-1505389_5	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-1505389_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1505389_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1505389_6	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-1505389_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1505389_12	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-1505389_12	eggNOG-mapper	553220.CAMGR0001_2115	NA	NA
UHGV-1505389_12	Pfam	PF06356	NA	DUF1064
UHGV-1505389_12	Structural annotation	PF06356	NA	NA
UHGV-1505389_13	PHROG	phrog_24518	NA	unknown function
UHGV-1505389_13	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1505389_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1505389_14	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1505389_14	UniRef90	UniRef90_A0A2V2FQV6	ParB domain-containing protein	NA
UHGV-1505389_14	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-1505389_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1505389_14	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1505389_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1505389_14	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1505389_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1505389_15	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1505389_15	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-1505389_15	Structural annotation	PF21578	NA	NA
UHGV-1505389_16	Structural annotation	PF02996	NA	NA
UHGV-1505389_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1505389_17	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-1505389_17	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-1505389_17	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1505389_17	Structural annotation	PF07141	NA	NA
UHGV-1505389_18	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1505389_18	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-1505389_18	eggNOG-mapper	293826.Amet_2409	HNH endonuclease	NA
UHGV-1505389_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1505389_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1505389_18	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1505389_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1505389_20	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-1505389_20	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-1505389_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1505389_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1505389_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1505389_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1505389_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1505389_21	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-1505389_21	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-1505389_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1505389_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1505389_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1505389_22	KOfam	K06904	NA	NA
UHGV-1505389_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1505389_22	UniRef90	UniRef90_R5W1K4	Putative phage prohead protease	NA
UHGV-1505389_22	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-1505389_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1505389_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1505389_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1505389_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1505389_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-1505389_23	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-1505389_23	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1505389_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1505389_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1505389_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1505389_23	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1505389_24	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-1505389_24	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-1505389_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1505389_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1505389_25	UniRef90	UniRef90_R6Z5T8	Putative phage head-tail adaptor	NA
UHGV-1505389_25	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1505389_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1505389_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1505389_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1505389_26	Structural annotation	TIGR01725	NA	NA
UHGV-1505389_27	Structural annotation	PF05657	NA	NA
UHGV-1505389_28	PHROG	phrog_88	major tail protein	tail
UHGV-1505389_28	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-1505389_28	eggNOG-mapper	1120971.AUCA01000037_gene2904	Phage tail tube protein	NA
UHGV-1505389_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1505389_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1505389_30	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1505389_30	PHROG	phrog_5218	NA	unknown function
UHGV-1505389_30	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-1505389_30	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-1505389_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1505389_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1505389_30	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1505389_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1505389_31	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-1505389_31	eggNOG-mapper	665956.HMPREF1032_00687	Phage tail protein	NA
UHGV-1505389_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1505389_31	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1505389_32	PHROG	phrog_538	minor tail protein	tail
UHGV-1505389_32	UniRef90	UniRef90_UPI001D076D06	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1505389_32	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-1505389_32	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1505389_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1505389_33	PHROG	phrog_1220	head protein	head and packaging
UHGV-1505389_33	UniRef90	UniRef90_A0A7M4B3C1	Phage structural protein	NA
UHGV-1505389_33	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1505389_37	PHROG	phrog_199	holin	lysis
UHGV-1505389_37	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-1505389_37	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-1505389_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1505389_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1505389_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1505389_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1505389_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1505389_38	PHROG	phrog_670	endolysin	lysis
UHGV-1505389_38	UniRef90	UniRef90_A0A348ZBJ3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1505389_38	eggNOG-mapper	1232453.BAIF02000013_gene3229	Ami_2	NA
UHGV-1505389_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1505389_38	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1505389_38	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1505389_39	PHROG	phrog_2104	NA	unknown function
UHGV-1505389_39	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-1505389_39	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-1505389_39	Pfam	PF01381	Helix-turn-helix	HTH_3