UHGV-1505522

Genome information

vOTU vOTU-021996

Genome length 33,189 bps

CDS count 59

Completeness 64.81% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1505522
vOTU ID	vOTU-021996
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229336
BioSample	SAMEA2581914
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.91
Jumbo phage	No

Genome content
Genome length	33,189 bps
GC content	50.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	86.48%
Average CDS length	492.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1505522_1	PHROG	phrog_9562	NA	unknown function
UHGV-1505522_1	UniRef90	UniRef90_A0A1C5W9L2	Type III effector pipB2	NA
UHGV-1505522_1	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-1505522_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1505522_1	Pfam	PF19062	NA	DUF5758
UHGV-1505522_1	COG	COG1357	NA	NA
UHGV-1505522_1	Structural annotation	PF19062	NA	NA
UHGV-1505522_2	PHROG	phrog_25245	NA	unknown function
UHGV-1505522_2	UniRef90	UniRef90_U2QJB7	3D domain protein	NA
UHGV-1505522_2	eggNOG-mapper	1226322.HMPREF1545_00012	3D domain	NA
UHGV-1505522_2	Pfam	PF06725	3D domain	3D
UHGV-1505522_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1505522_2	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-1505522_4	PHROG	phrog_674	NA	unknown function
UHGV-1505522_4	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-1505522_4	eggNOG-mapper	641112.ACOK01000103_gene524	NA	NA
UHGV-1505522_4	Pfam	PF07083	NA	DUF1351
UHGV-1505522_4	Structural annotation	PF07083	NA	NA
UHGV-1505522_5	PHROG	phrog_3657	NA	unknown function
UHGV-1505522_5	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1505522_5	eggNOG-mapper	1567011.A0A0A7RUE9_9VIRU	NA	NA
UHGV-1505522_6	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1505522_6	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-1505522_6	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1505522_6	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1505522_6	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1505522_6	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1505522_7	PHROG	phrog_16304	NA	unknown function
UHGV-1505522_7	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-1505522_7	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-1505522_7	Pfam	PF19808	NA	DUF6291
UHGV-1505522_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1505522_7	Structural annotation	PF19808	NA	NA
UHGV-1505522_8	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1505522_8	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1505522_8	UniRef90	UniRef90_U2QJC2	SF4 helicase domain-containing protein	NA
UHGV-1505522_8	eggNOG-mapper	1226322.HMPREF1545_00017	DnaB-like helicase C terminal domain	NA
UHGV-1505522_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1505522_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-1505522_8	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-1505522_10	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1505522_10	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1505522_10	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-1505522_10	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1505522_12	PHROG	phrog_28782	NA	unknown function
UHGV-1505522_12	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-1505522_12	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-1505522_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1505522_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1505522_13	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1505522_13	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1505522_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1505522_13	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1505522_14	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1505522_14	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-1505522_14	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-1505522_14	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1505522_14	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1505522_14	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-1505522_16	PHROG	phrog_10714	NA	unknown function
UHGV-1505522_16	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1505522_16	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-1505522_19	PHROG	phrog_25732	NA	unknown function
UHGV-1505522_19	Structural annotation	NF011227	NA	NA
UHGV-1505522_21	PHROG	phrog_37865	NA	unknown function
UHGV-1505522_22	PHROG	phrog_38832	NA	unknown function
UHGV-1505522_22	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1505522_24	PHROG	phrog_22543	NA	unknown function
UHGV-1505522_27	PHROG	phrog_8684	NA	unknown function
UHGV-1505522_27	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-1505522_27	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-1505522_27	Pfam	PF09643	YopX protein	YopX
UHGV-1505522_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1505522_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1505522_31	PHROG	phrog_25385	NA	unknown function
UHGV-1505522_31	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-1505522_32	PHROG	phrog_1709	NA	unknown function
UHGV-1505522_32	eggNOG-mapper	1235793.C809_02477	NA	NA
UHGV-1505522_32	Structural annotation	PF21076	NA	NA
UHGV-1505522_33	PHROG	phrog_12588	NA	unknown function
UHGV-1505522_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1505522_34	UniRef90	UniRef90_A0A0F0C267	HTH cro/C1-type domain-containing protein	NA
UHGV-1505522_34	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-1505522_34	Structural annotation	PF16677	NA	NA
UHGV-1505522_41	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1505522_41	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-1505522_41	Structural annotation	PF10013, COG4338	NA	NA
UHGV-1505522_42	KOfam	K07486	K07486; transposase	NA
UHGV-1505522_42	PHROG	phrog_2199	transposase	integration and excision
UHGV-1505522_42	UniRef90	UniRef90_R6YIE4	Transposase IS116/IS110/IS902 family protein	NA
UHGV-1505522_42	eggNOG-mapper	411471.SUBVAR_04471	Transposase IS116/IS110/IS902 family	NA
UHGV-1505522_42	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-1505522_42	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-1505522_42	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-1505522_42	COG	COG3547	Transposase	NA
UHGV-1505522_42	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-1505522_43	UniRef90	UniRef90_A0A3D5L5C3	Cytochrome C	NA
UHGV-1505522_43	eggNOG-mapper	1200567.JNKD01000039_gene220	NA	NA
UHGV-1505522_44	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1505522_44	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1505522_44	UniRef90	UniRef90_A0A1C5WBR5	RNA-splicing ligase RtcB	NA
UHGV-1505522_44	eggNOG-mapper	1232443.BAIA02000103_gene2968	tRNA-splicing ligase RtcB	NA
UHGV-1505522_44	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1505522_44	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1505522_44	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1505522_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1505522_45	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1505522_45	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1505522_45	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1505522_45	COG	COG5410	NA	NA
UHGV-1505522_45	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1505522_46	Structural annotation	COG4416	NA	NA
UHGV-1505522_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-1505522_47	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-1505522_47	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1505522_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1505522_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1505522_48	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1505522_48	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1505522_48	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1505522_50	PHROG	phrog_909	major head protein	head and packaging
UHGV-1505522_51	PHROG	phrog_29	major head protein	head and packaging
UHGV-1505522_51	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-1505522_51	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-1505522_51	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1505522_51	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1505522_52	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-1505522_53	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-1505522_53	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1505522_53	Structural annotation	TIGR01560	NA	NA
UHGV-1505522_54	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1505522_54	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-1505522_54	Structural annotation	PF17375	NA	NA
UHGV-1505522_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1505522_55	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-1505522_55	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-1505522_55	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1505522_56	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1505522_57	PHROG	phrog_158	major tail protein	tail
UHGV-1505522_57	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-1505522_57	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1505522_58	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-1505522_58	Pfam	PF16478	NA	DUF5055
UHGV-1505522_58	Structural annotation	PF16478	NA	NA