UHGV-1505687

Genome information

Genome length 33,315 bps

CDS count 47

Completeness 93.91% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-1505687
vOTU ID	vOTU-012394
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0229984
BioSample	SAMN00715225
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.25
Jumbo phage	No

Genome content
Genome length	33,315 bps
GC content	43.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.27%
Average CDS length	671.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1505687_5	Structural annotation	PF14564	NA	NA
UHGV-1505687_6	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-1505687_8	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1505687_8	Structural annotation	PF10651	NA	NA
UHGV-1505687_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1505687_11	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-1505687_11	PHROG	phrog_19856	NA	unknown function
UHGV-1505687_11	eggNOG-mapper	358681.BBR47_35100	Restriction endonuclease	NA
UHGV-1505687_11	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1505687_11	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1505687_11	COG	COG0551	DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains	NA
UHGV-1505687_13	Structural annotation	PF06199, PF05561, MF_01457, TIGR02126, COG5437	NA	NA
UHGV-1505687_14	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-1505687_15	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-1505687_17	Structural annotation	PF05065, PF13620, MF_04119, TIGR04387, TIGR04134, COG4653	NA	NA
UHGV-1505687_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1505687_19	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-1505687_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1505687_19	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1505687_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-1505687_20	eggNOG-mapper	272626.lin0106	Portal protein	NA
UHGV-1505687_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-1505687_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1505687_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1505687_21	UniRef90	UniRef90_A0A3D2E0R8	Terminase_3 domain-containing protein	NA
UHGV-1505687_21	eggNOG-mapper	525318.HMPREF0497_1619	Terminase RNAseH like domain	NA
UHGV-1505687_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1505687_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1505687_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1505687_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1505687_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1505687_22	UniRef90	UniRef90_A0A3E2U3Q4	Terminase small subunit	NA
UHGV-1505687_22	eggNOG-mapper	97138.C820_00222	Terminase small subunit	NA
UHGV-1505687_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1505687_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1505687_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1505687_23	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1505687_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1505687_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1505687_25	UniRef90	UniRef90_A0A316QG51	Single-stranded DNA-binding protein	NA
UHGV-1505687_25	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1505687_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1505687_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1505687_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1505687_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1505687_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1505687_26	Structural annotation	PF11132	NA	NA
UHGV-1505687_28	PHROG	phrog_10455	NA	unknown function
UHGV-1505687_30	PHROG	phrog_13999	NA	unknown function
UHGV-1505687_30	eggNOG-mapper	889338.G3BM21_9CAUD	NA	NA
UHGV-1505687_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1505687_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1505687_31	UniRef90	UniRef90_A0A415L586	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1505687_31	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-1505687_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1505687_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1505687_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1505687_32	PHROG	phrog_4973	NA	unknown function
UHGV-1505687_32	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-1505687_32	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-1505687_32	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1505687_32	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-1505687_35	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1505687_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1505687_35	UniRef90	UniRef90_A0A1I5IYN3	AAA domain-containing protein	NA
UHGV-1505687_35	eggNOG-mapper	1280689.AUJC01000001_gene1994	NA	NA
UHGV-1505687_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1505687_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1505687_35	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1505687_36	PHROG	phrog_16304	NA	unknown function
UHGV-1505687_36	UniRef90	UniRef90_UPI001F3474DD	NA	NA
UHGV-1505687_36	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-1505687_36	Pfam	PF19808	NA	DUF6291
UHGV-1505687_37	PHROG	phrog_398	NA	unknown function
UHGV-1505687_37	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-1505687_37	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1505687_37	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1505687_37	Structural annotation	PF16784	NA	NA
UHGV-1505687_38	PHROG	phrog_14970	NA	unknown function
UHGV-1505687_38	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-1505687_38	eggNOG-mapper	1122981.AUME01000026_gene555	double-strand break repair protein	NA
UHGV-1505687_38	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1505687_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1505687_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1505687_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1505687_39	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-1505687_39	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1505687_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1505687_39	Structural annotation	PF05565	NA	NA
UHGV-1505687_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1505687_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1505687_42	UniRef90	UniRef90_R6YB03	Tyr recombinase domain-containing protein	NA
UHGV-1505687_42	eggNOG-mapper	484018.BACPLE_03294	Belongs to the 'phage' integrase family	NA
UHGV-1505687_42	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1505687_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1505687_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1505687_42	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1505687_43	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1505687_43	UniRef90	UniRef90_A0A0D1BQB1	NUMOD4 domain-containing protein	NA
UHGV-1505687_43	eggNOG-mapper	191610.CATYP_01205	NUMOD4 motif	NA
UHGV-1505687_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1505687_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1505687_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1505687_46	UniRef90	UniRef90_R7FZN6	Putative helix-turn-helix protein	NA
UHGV-1505687_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1505687_46	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-1505687_47	KOfam	K14059	int; integrase	NA
UHGV-1505687_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1505687_47	UniRef90	UniRef90_A0A2V2GHD8	Integrase_SAM-like_N domain-containing protein	NA
UHGV-1505687_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1505687_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA