UHGV-1506323

Genome information

Genome length 21,496 bps

CDS count 29

Completeness 58.38% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1506323
vOTU ID	vOTU-025577
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0163670
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.68
Jumbo phage	No

Genome content
Genome length	21,496 bps
GC content	43.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	91.26%
Average CDS length	681.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1506323_2	PHROG	phrog_1914	NA	unknown function
UHGV-1506323_2	UniRef90	UniRef90_UPI001F431565	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1506323_2	eggNOG-mapper	1410625.JHWK01000010_gene2005	IrrE N-terminal-like domain	NA
UHGV-1506323_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1506323_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1506323_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1506323_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1506323_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1506323_3	UniRef90	UniRef90_UPI001F191150	helix-turn-helix domain-containing protein	NA
UHGV-1506323_3	eggNOG-mapper	1280694.AUJQ01000012_gene1844	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1506323_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1506323_3	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1506323_3	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1506323_5	PHROG	phrog_2649	endolysin	lysis
UHGV-1506323_5	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1506323_5	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-1506323_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1506323_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1506323_5	Structural annotation	COG3409	NA	NA
UHGV-1506323_6	PHROG	phrog_199	holin	lysis
UHGV-1506323_6	UniRef90	UniRef90_A0A3D4HRA5	Holin	NA
UHGV-1506323_6	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-1506323_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1506323_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1506323_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1506323_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1506323_8	PHROG	phrog_17180	NA	unknown function
UHGV-1506323_8	eggNOG-mapper	1268240.ATFI01000012_gene1337	NA	NA
UHGV-1506323_8	Structural annotation	PF14282	NA	NA
UHGV-1506323_10	PHROG	phrog_1220	head protein	head and packaging
UHGV-1506323_10	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-1506323_10	eggNOG-mapper	931626.Awo_c34980	COG NOG18825 non supervised orthologous group	NA
UHGV-1506323_11	PHROG	phrog_538	minor tail protein	tail
UHGV-1506323_11	UniRef90	UniRef90_UPI0015C5E26D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1506323_11	eggNOG-mapper	536232.CLM_2921	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1506323_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1506323_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1506323_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1506323_12	UniRef90	UniRef90_A0A417QI91	Phage tail family protein	NA
UHGV-1506323_12	eggNOG-mapper	536232.CLM_2922	Phage tail protein	NA
UHGV-1506323_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1506323_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1506323_12	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1506323_13	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-1506323_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1506323_13	UniRef90	UniRef90_A0A417QIC1	Phage tail tape measure protein	NA
UHGV-1506323_13	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-1506323_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1506323_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1506323_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1506323_13	Structural annotation	PF10145, PF16454, TIGR01760, COG5280	NA	NA
UHGV-1506323_15	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-1506323_15	Structural annotation	PF11836	NA	NA
UHGV-1506323_16	PHROG	phrog_88	major tail protein	tail
UHGV-1506323_16	UniRef90	UniRef90_UPI001C03410D	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-1506323_16	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-1506323_16	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-1506323_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1506323_16	COG	COG5492	NA	NA
UHGV-1506323_16	Structural annotation	PF04630, PF12733, TIGR01603, COG3498	NA	NA
UHGV-1506323_17	UniRef90	UniRef90_A0A7G9GHG7	Phage tail protein	NA
UHGV-1506323_17	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-1506323_17	COG	COG5492	NA	NA
UHGV-1506323_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1506323_18	UniRef90	UniRef90_R6CVJ7	HK97 gp10 family phage protein	NA
UHGV-1506323_18	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-1506323_18	Structural annotation	TIGR01725	NA	NA
UHGV-1506323_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1506323_19	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1506323_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1506323_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1506323_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1506323_20	PHROG	phrog_5223	neck protein	connector
UHGV-1506323_20	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-1506323_20	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-1506323_20	Structural annotation	TIGR01560	NA	NA
UHGV-1506323_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1506323_21	UniRef90	UniRef90_A0A417QHY0	Phage major capsid protein	NA
UHGV-1506323_21	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-1506323_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1506323_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1506323_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1506323_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1506323_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1506323_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1506323_22	UniRef90	UniRef90_A0A417QI98	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1506323_22	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-1506323_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1506323_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1506323_22	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1506323_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1506323_23	UniRef90	UniRef90_R9L0S4	HK97 family phage portal protein	NA
UHGV-1506323_23	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1506323_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1506323_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1506323_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1506323_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1506323_24	UniRef90	UniRef90_A0A3E2NCT9	Terminase large subunit	NA
UHGV-1506323_24	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-1506323_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1506323_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1506323_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1506323_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1506323_25	PHROG	phrog_1066	NA	unknown function
UHGV-1506323_25	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-1506323_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1506323_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1506323_26	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-1506323_26	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1506323_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1506323_27	PHROG	phrog_13890	NA	unknown function
UHGV-1506323_27	UniRef90	UniRef90_A0A849XQQ9	NA	NA
UHGV-1506323_27	eggNOG-mapper	877414.ATWA01000049_gene449	NA	NA
UHGV-1506323_27	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-1506323_29	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-1506323_29	Structural annotation	PF05263, TIGR01636	NA	NA