UHGV-1506466

Genome information

Genome length 35,521 bps

CDS count 58

Completeness 99.40% (high-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-1506466
vOTU ID	vOTU-013713
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271555
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.4
Jumbo phage	No

Genome content
Genome length	35,521 bps
GC content	37.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	86.22%
Average CDS length	530.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1506466_1	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1506466_1	UniRef90	UniRef90_A0A417C3D7	Immunity protein	NA
UHGV-1506466_1	eggNOG-mapper	1408823.AXUS01000009_gene1981	Host cell surface-exposed lipoprotein	NA
UHGV-1506466_1	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1506466_1	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1506466_1	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-1506466_2	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1506466_2	UniRef90	UniRef90_A0A3E3I6G1	NA	NA
UHGV-1506466_2	eggNOG-mapper	585501.HMPREF6123_0812	NA	NA
UHGV-1506466_2	Pfam	PF10097	NA	DUF2335
UHGV-1506466_2	COG	COG5346	NA	NA
UHGV-1506466_3	UniRef90	UniRef90_UPI00148B007E	helix-turn-helix transcriptional regulator	NA
UHGV-1506466_3	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1506466_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1506466_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1506466_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1506466_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1506466_6	UniRef90	UniRef90_UPI001BC85B83	helix-turn-helix domain-containing protein	NA
UHGV-1506466_6	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-1506466_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1506466_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1506466_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1506466_12	UniRef90	UniRef90_UPI0019FC5CCD	NA	NA
UHGV-1506466_12	Structural annotation	PF11195	NA	NA
UHGV-1506466_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1506466_13	UniRef90	UniRef90_A0A414B860	XRE family transcriptional regulator	NA
UHGV-1506466_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1506466_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1506466_13	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-1506466_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1506466_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1506466_17	UniRef90	UniRef90_A0A414B859	ParA family protein	NA
UHGV-1506466_17	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-1506466_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-1506466_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1506466_17	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1506466_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1506466_18	PHROG	phrog_15982	NA	unknown function
UHGV-1506466_18	UniRef90	UniRef90_A0A414B854	ParB domain-containing protein	NA
UHGV-1506466_18	eggNOG-mapper	1235792.C808_00072	ParB-like nuclease domain	NA
UHGV-1506466_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1506466_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1506466_18	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1506466_21	PHROG	phrog_15768	NA	unknown function
UHGV-1506466_21	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-1506466_21	eggNOG-mapper	742767.HMPREF9456_03267	NA	NA
UHGV-1506466_21	Structural annotation	PF01978, MF_01819, TIGR01889, COG1846	NA	NA
UHGV-1506466_22	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-1506466_23	PHROG	phrog_1974	NA	unknown function
UHGV-1506466_23	UniRef90	UniRef90_UPI00156FBD26	nucleoid-associated protein	NA
UHGV-1506466_23	eggNOG-mapper	411469.EUBHAL_00354	37-kD nucleoid-associated bacterial protein	NA
UHGV-1506466_23	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-1506466_23	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-1506466_24	PHROG	phrog_1974	NA	unknown function
UHGV-1506466_24	UniRef90	UniRef90_A0A285PMT7	Nucleoid-associated protein NdpA	NA
UHGV-1506466_24	eggNOG-mapper	411469.EUBHAL_00354	37-kD nucleoid-associated bacterial protein	NA
UHGV-1506466_24	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-1506466_24	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-1506466_25	UniRef90	UniRef90_A0A1C5MB66	NA	NA
UHGV-1506466_25	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-1506466_25	Pfam	PF19789	NA	DUF6273
UHGV-1506466_25	COG	COG3209	NA	NA
UHGV-1506466_25	Structural annotation	PF19789	NA	NA
UHGV-1506466_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1506466_30	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-1506466_30	Structural annotation	PF02996	NA	NA
UHGV-1506466_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1506466_32	PHROG	phrog_216	integrase	integration and excision
UHGV-1506466_32	UniRef90	UniRef90_A0A414B850	Site-specific integrase	NA
UHGV-1506466_32	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-1506466_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1506466_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1506466_32	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1506466_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1506466_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1506466_34	UniRef90	UniRef90_A0A2V2DAV5	HNH endonuclease	NA
UHGV-1506466_34	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-1506466_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1506466_35	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-1506466_35	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-1506466_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1506466_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1506466_36	UniRef90	UniRef90_A0A174QR55	Phage terminase-like protein, large subunit	NA
UHGV-1506466_36	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-1506466_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1506466_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1506466_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1506466_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1506466_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-1506466_37	UniRef90	UniRef90_A0A8E3N3P1	Phage portal protein	NA
UHGV-1506466_37	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-1506466_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1506466_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1506466_37	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1506466_38	KOfam	K06904	NA	NA
UHGV-1506466_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1506466_38	UniRef90	UniRef90_A0A2V2DC05	HK97 family phage prohead protease	NA
UHGV-1506466_38	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-1506466_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1506466_38	COG	COG3740	Phage head maturation protease	NA
UHGV-1506466_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1506466_39	UniRef90	UniRef90_UPI001914F86F	phage major capsid protein	NA
UHGV-1506466_39	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-1506466_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1506466_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1506466_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1506466_40	UniRef90	UniRef90_UPI0006D0B01F	head-tail connector protein	NA
UHGV-1506466_40	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-1506466_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1506466_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1506466_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-1506466_41	UniRef90	UniRef90_UPI0019162AAF	phage head closure protein	NA
UHGV-1506466_41	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-1506466_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1506466_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1506466_41	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1506466_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1506466_42	UniRef90	UniRef90_UPI0019152ACE	HK97 gp10 family phage protein	NA
UHGV-1506466_42	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-1506466_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1506466_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1506466_43	PHROG	phrog_78	tail terminator	connector
UHGV-1506466_43	UniRef90	UniRef90_A6XMK2	Aminopeptidase	NA
UHGV-1506466_43	eggNOG-mapper	396034.A6XMK2_9CAUD	aminopeptidase activity	NA
UHGV-1506466_43	Structural annotation	PF20765	NA	NA
UHGV-1506466_44	PHROG	phrog_88	major tail protein	tail
UHGV-1506466_44	UniRef90	UniRef90_A0A8E3N1Q1	Phage tail protein	NA
UHGV-1506466_44	eggNOG-mapper	1235800.C819_03956	phage major tail protein, phi13 family	NA
UHGV-1506466_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1506466_44	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1506466_45	PHROG	phrog_709	NA	unknown function
UHGV-1506466_45	eggNOG-mapper	883112.HMPREF9707_01605	NA	NA
UHGV-1506466_45	Structural annotation	PF11836	NA	NA
UHGV-1506466_46	PHROG	phrog_3033	NA	unknown function
UHGV-1506466_46	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1506466_46	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-1506466_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1506466_47	UniRef90	UniRef90_UPI00110749EB	phage tail tape measure protein	NA
UHGV-1506466_47	eggNOG-mapper	1469948.JPNB01000001_gene702	tail tape measure protein	NA
UHGV-1506466_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1506466_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1506466_47	COG	COG5283	Phage-related tail protein	NA
UHGV-1506466_47	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1506466_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1506466_48	UniRef90	UniRef90_A0A414B833	Phage tail protein	NA
UHGV-1506466_48	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-1506466_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1506466_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-1506466_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1506466_49	PHROG	phrog_13289	tail protein	tail
UHGV-1506466_49	UniRef90	UniRef90_A0A414B824	Prophage_tail domain-containing protein	NA
UHGV-1506466_49	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-1506466_49	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1506466_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1506466_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1506466_49	COG	COG4926	Phage-related protein	NA
UHGV-1506466_49	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1506466_50	PHROG	phrog_16164	NA	unknown function
UHGV-1506466_50	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-1506466_50	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1506466_51	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-1506466_53	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1506466_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1506466_53	UniRef90	UniRef90_A0A416ZKZ8	Integrase	NA
UHGV-1506466_53	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1506466_53	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1506466_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1506466_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1506466_53	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1506466_54	Structural annotation	PF03412, NF033920, COG4990	NA	NA
UHGV-1506466_55	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-1506466_55	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-1506466_56	PHROG	phrog_443	holin	lysis
UHGV-1506466_56	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-1506466_56	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-1506466_56	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1506466_56	Structural annotation	PF16945	NA	NA
UHGV-1506466_57	KOfam	K07273	acm; lysozyme	NA
UHGV-1506466_57	PHROG	phrog_291	endolysin	lysis
UHGV-1506466_57	UniRef90	UniRef90_A0A174K8T9	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1506466_57	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-1506466_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1506466_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1506466_57	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1506466_58	UniRef90	UniRef90_A0A3E4K601	23S rRNA (Uracil-5-)-methyltransferase RumA	NA
UHGV-1506466_58	eggNOG-mapper	1160721.RBI_I01274	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family	NA
UHGV-1506466_58	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA