UHGV-1506472

Genome information

Genome length 33,443 bps

CDS count 45

Completeness 93.50% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-1506472
vOTU ID	vOTU-072636
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0230653
BioSample	SAMEA2738079
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.66
Jumbo phage	No

Genome content
Genome length	33,443 bps
GC content	31.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.33%
Average CDS length	696.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1506472_1	Structural annotation	TIGR02338	NA	NA
UHGV-1506472_2	PHROG	phrog_4188	NA	unknown function
UHGV-1506472_4	PHROG	phrog_4074	NA	unknown function
UHGV-1506472_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1506472_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1506472_8	UniRef90	UniRef90_A0A134A0C7	Single-stranded DNA-binding protein	NA
UHGV-1506472_8	eggNOG-mapper	1321820.HMPREF1983_00947	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1506472_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1506472_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1506472_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1506472_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1506472_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1506472_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1506472_9	PHROG	phrog_216	integrase	integration and excision
UHGV-1506472_9	UniRef90	UniRef90_U2Q4Z2	Site-specific recombinase, phage integrase family	NA
UHGV-1506472_9	eggNOG-mapper	1321820.HMPREF1983_00948	Phage integrase family	NA
UHGV-1506472_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1506472_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1506472_9	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1506472_10	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1506472_10	UniRef90	UniRef90_A0A7W9SF61	NA	NA
UHGV-1506472_10	eggNOG-mapper	1321820.HMPREF1983_00949	DnaD domain protein	NA
UHGV-1506472_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1506472_10	Structural annotation	PF19481, PF02002, TIGR01889, COG0640	NA	NA
UHGV-1506472_11	PHROG	phrog_98	NA	unknown function
UHGV-1506472_11	UniRef90	UniRef90_A0A134A0C4	YopX domain-containing protein	NA
UHGV-1506472_11	eggNOG-mapper	1220589.CD32_00355	YopX protein	NA
UHGV-1506472_11	Pfam	PF09643	YopX protein	YopX
UHGV-1506472_15	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-1506472_15	UniRef90	UniRef90_U2QNQ7	dUTP diphosphatase	NA
UHGV-1506472_15	eggNOG-mapper	1321820.HMPREF1983_00952	dUTPase	NA
UHGV-1506472_15	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-1506472_15	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-1506472_15	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1506472_16	UniRef90	UniRef90_A0A134A0C2	AGC-kinase C-terminal domain-containing protein	NA
UHGV-1506472_21	UniRef90	UniRef90_A0A2X4NB52	Helix-turn-helix	NA
UHGV-1506472_21	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-1506472_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1506472_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1506472_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1506472_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1506472_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1506472_22	UniRef90	UniRef90_R5ZK71	Putative repressor LexA	NA
UHGV-1506472_22	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1506472_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1506472_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1506472_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1506472_22	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1506472_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1506472_23	PHROG	phrog_95	integrase	integration and excision
UHGV-1506472_23	UniRef90	UniRef90_U2RW14	Resolvase protein	NA
UHGV-1506472_23	eggNOG-mapper	1321820.HMPREF1983_00960	Resolvase, N terminal domain	NA
UHGV-1506472_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1506472_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-1506472_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1506472_23	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1506472_25	PHROG	phrog_1309	endolysin	lysis
UHGV-1506472_25	UniRef90	UniRef90_A0A133ZZY6	CHAP domain protein	NA
UHGV-1506472_25	eggNOG-mapper	1321820.HMPREF1983_00914	CHAP domain	NA
UHGV-1506472_25	Pfam	PF05257	CHAP domain	CHAP
UHGV-1506472_25	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1506472_25	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1506472_25	Structural annotation	PF08460, PF05382, TIGR02219, COG0791	NA	NA
UHGV-1506472_26	PHROG	phrog_1129	holin	lysis
UHGV-1506472_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1506472_27	PHROG	phrog_32123	NA	unknown function
UHGV-1506472_27	eggNOG-mapper	1005705.HMPREF9967_1058	domain, Protein	NA
UHGV-1506472_27	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1506472_28	PHROG	phrog_4257	NA	unknown function
UHGV-1506472_28	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-1506472_28	eggNOG-mapper	562981.HMPREF0428_00966	NA	NA
UHGV-1506472_30	eggNOG-mapper	525255.HMPREF0077_0366	NA	NA
UHGV-1506472_30	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1506472_30	Structural annotation	PF07104	NA	NA
UHGV-1506472_32	PHROG	phrog_1330	tail protein	tail
UHGV-1506472_32	UniRef90	UniRef90_UPI000930399F	tail fiber domain-containing protein	NA
UHGV-1506472_32	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-1506472_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1506472_32	COG	COG1511	NA	NA
UHGV-1506472_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1506472_33	eggNOG-mapper	1321820.HMPREF1983_00923	tail component	NA
UHGV-1506472_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-1506472_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1506472_34	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1506472_34	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1506472_34	UniRef90	UniRef90_UPI000931FE8C	phage tail tape measure protein	NA
UHGV-1506472_34	eggNOG-mapper	435838.HMPREF0786_00863	Phage tail tape measure protein	NA
UHGV-1506472_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1506472_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1506472_34	COG	COG3953	SLT domain protein	NA
UHGV-1506472_34	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1506472_36	PHROG	phrog_88	major tail protein	tail
UHGV-1506472_36	UniRef90	UniRef90_UPI00156DA45B	phage tail protein	NA
UHGV-1506472_36	eggNOG-mapper	742741.HMPREF9475_02369	phage major tail protein, phi13 family	NA
UHGV-1506472_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1506472_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1506472_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1506472_38	UniRef90	UniRef90_UPI000E0BDB75	HK97 gp10 family phage protein	NA
UHGV-1506472_38	eggNOG-mapper	1121423.JONT01000041_gene950	NA	NA
UHGV-1506472_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1506472_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1506472_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-1506472_39	UniRef90	UniRef90_UPI0009311A76	phage head closure protein	NA
UHGV-1506472_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1506472_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1506472_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1506472_40	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1506472_40	UniRef90	UniRef90_UPI000931A3A2	head-tail connector protein	NA
UHGV-1506472_40	eggNOG-mapper	796940.HMPREF9628_00142	Phage gp6-like head-tail connector protein	NA
UHGV-1506472_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1506472_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1506472_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1506472_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-1506472_41	UniRef90	UniRef90_UPI0009306DB3	phage major capsid protein	NA
UHGV-1506472_41	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-1506472_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1506472_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1506472_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1506472_42	KOfam	K06904	NA	NA
UHGV-1506472_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1506472_42	UniRef90	UniRef90_UPI0009313360	HK97 family phage prohead protease	NA
UHGV-1506472_42	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-1506472_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1506472_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1506472_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1506472_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-1506472_43	UniRef90	UniRef90_UPI000E0C8FF8	phage portal protein	NA
UHGV-1506472_43	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-1506472_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1506472_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1506472_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1506472_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1506472_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1506472_44	UniRef90	UniRef90_UPI000AD5179C	terminase large subunit	NA
UHGV-1506472_44	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-1506472_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1506472_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1506472_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1506472_44	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1506472_45	PHROG	phrog_13845	NA	unknown function
UHGV-1506472_45	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA