UHGV-1507137

Genome information

Genome length 35,173 bps

CDS count 58

Completeness 87.41% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-1507137
vOTU ID	vOTU-018189
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0239643
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.84
Jumbo phage	No

Genome content
Genome length	35,173 bps
GC content	45.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.56%
Average CDS length	573.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1507137_1	PHROG	phrog_134	NA	unknown function
UHGV-1507137_1	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1507137_1	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1507137_1	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1507137_3	PHROG	phrog_5302	tail protein	tail
UHGV-1507137_3	UniRef90	UniRef90_UPI001C3BCE79	Phage tail protein	NA
UHGV-1507137_3	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-1507137_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1507137_3	Structural annotation	PF10651	NA	NA
UHGV-1507137_5	PHROG	phrog_1194	NA	unknown function
UHGV-1507137_5	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-1507137_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1507137_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1507137_6	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-1507137_6	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-1507137_6	COG	COG1511	NA	NA
UHGV-1507137_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1507137_7	PHROG	phrog_706	NA	unknown function
UHGV-1507137_7	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-1507137_7	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1507137_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1507137_7	Structural annotation	PF06854	NA	NA
UHGV-1507137_8	PHROG	phrog_11299	NA	unknown function
UHGV-1507137_9	PHROG	phrog_3099	NA	unknown function
UHGV-1507137_9	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-1507137_9	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1507137_10	PHROG	phrog_3266	tail completion	connector
UHGV-1507137_10	Structural annotation	PF12691	NA	NA
UHGV-1507137_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1507137_11	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-1507137_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1507137_11	Structural annotation	PF11114	NA	NA
UHGV-1507137_12	PHROG	phrog_3366	NA	unknown function
UHGV-1507137_12	Pfam	PF20536	NA	DUF6751
UHGV-1507137_12	Structural annotation	PF20536	NA	NA
UHGV-1507137_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1507137_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-1507137_15	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-1507137_15	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-1507137_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1507137_16	UniRef90	UniRef90_A0A7T3RDX5	Phage scaffolding protein	NA
UHGV-1507137_16	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-1507137_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1507137_17	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-1507137_17	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1507137_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1507137_17	COG	COG2369	NA	NA
UHGV-1507137_17	Structural annotation	PF06152	NA	NA
UHGV-1507137_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-1507137_18	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1507137_18	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1507137_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1507137_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1507137_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1507137_19	UniRef90	UniRef90_UPI00137A4D1F	PBSX family phage terminase large subunit	NA
UHGV-1507137_19	eggNOG-mapper	525255.HMPREF0077_0392	Terminase-like family	NA
UHGV-1507137_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1507137_19	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1507137_20	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-1507137_21	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-1507137_23	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1507137_23	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-1507137_23	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1507137_26	PHROG	phrog_3136	NA	unknown function
UHGV-1507137_26	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-1507137_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1507137_26	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1507137_28	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1507137_28	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-1507137_28	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-1507137_30	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1507137_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1507137_30	UniRef90	UniRef90_A0A658JDB8	XRE family transcriptional regulator (Fragment)	NA
UHGV-1507137_30	eggNOG-mapper	1000588.HMPREF9965_0492	transcriptional	NA
UHGV-1507137_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1507137_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507137_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1507137_32	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1507137_32	UniRef90	UniRef90_A0A6S6XJK5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1507137_32	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1507137_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1507137_32	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1507137_33	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-1507137_33	PHROG	phrog_359	DNA methyltransferase	other
UHGV-1507137_33	UniRef90	UniRef90_A0A417PE64	DNA methyltransferase	NA
UHGV-1507137_33	eggNOG-mapper	1235792.C808_02259	MT-A70	NA
UHGV-1507137_33	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-1507137_33	Pfam	PF05063	MT-A70	MT-A70
UHGV-1507137_33	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-1507137_33	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-1507137_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1507137_35	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-1507137_35	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-1507137_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1507137_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1507137_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1507137_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1507137_36	UniRef90	UniRef90_A0A2V2G341	Single-stranded DNA-binding protein	NA
UHGV-1507137_36	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-1507137_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1507137_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1507137_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1507137_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1507137_36	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1507137_37	PHROG	phrog_398	NA	unknown function
UHGV-1507137_37	UniRef90	UniRef90_UPI00189E6EA3	putative HNHc nuclease	NA
UHGV-1507137_37	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1507137_37	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1507137_37	Structural annotation	PF16784	NA	NA
UHGV-1507137_38	Structural annotation	PF19561	NA	NA
UHGV-1507137_39	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507137_39	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-1507137_39	eggNOG-mapper	1567013.A0A0A7RVR3_9CAUD	NA	NA
UHGV-1507137_39	Pfam	PF12684	NA	DUF3799
UHGV-1507137_39	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1507137_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1507137_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1507137_40	UniRef90	UniRef90_C6JQL9	Recombinase, phage RecT family	NA
UHGV-1507137_40	eggNOG-mapper	469618.FVAG_00771	RecT family	NA
UHGV-1507137_40	Pfam	PF03837	RecT family	RecT
UHGV-1507137_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1507137_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1507137_40	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1507137_41	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-1507137_43	eggNOG-mapper	1403313.AXBR01000018_gene3548	Cell division suppressor protein YneA	NA
UHGV-1507137_43	COG	COG1388	LysM repeat	NA
UHGV-1507137_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1507137_49	UniRef90	UniRef90_A0A316L601	XRE family transcriptional regulator	NA
UHGV-1507137_49	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-1507137_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1507137_51	UniRef90	UniRef90_UPI001031B31D	stalk domain-containing protein	NA
UHGV-1507137_51	eggNOG-mapper	1297617.JPJD01000001_gene2682	Peptidase propeptide and YPEB domain protein	NA
UHGV-1507137_51	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1507137_51	COG	COG3212	PepSY domain containing protein, regulator of zincin peptidase activity	NA
UHGV-1507137_52	KOfam	K14059	int; integrase	NA
UHGV-1507137_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1507137_52	UniRef90	UniRef90_A0A353J242	Site-specific integrase	NA
UHGV-1507137_52	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-1507137_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1507137_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1507137_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1507137_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1507137_53	Structural annotation	PF02255, TIGR00823, COG1447	NA	NA
UHGV-1507137_54	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1507137_55	PHROG	phrog_16490	NA	unknown function
UHGV-1507137_55	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1507137_57	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA