UHGV-1507258

Genome information

Genome length 33,435 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1507258
vOTU ID	vOTU-013722
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0230607
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.98
Jumbo phage	No

Genome content
Genome length	33,435 bps
GC content	58.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.01%
Average CDS length	601.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1507258_1	PHROG	phrog_5223	neck protein	connector
UHGV-1507258_1	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-1507258_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-1507258_2	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-1507258_2	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-1507258_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1507258_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1507258_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1507258_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1507258_3	KOfam	K06904	NA	NA
UHGV-1507258_3	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1507258_3	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-1507258_3	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-1507258_3	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1507258_3	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1507258_3	COG	COG3740	Phage head maturation protease	NA
UHGV-1507258_3	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1507258_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1507258_4	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-1507258_4	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-1507258_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1507258_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1507258_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1507258_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1507258_5	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-1507258_5	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-1507258_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1507258_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1507258_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1507258_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1507258_6	PHROG	phrog_1066	NA	unknown function
UHGV-1507258_6	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-1507258_6	Structural annotation	TIGR01558	NA	NA
UHGV-1507258_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1507258_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507258_7	UniRef90	UniRef90_R7D851	HNH endonuclease domain protein	NA
UHGV-1507258_7	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-1507258_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1507258_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1507258_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1507258_8	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-1507258_8	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-1507258_9	PHROG	phrog_1828	NA	unknown function
UHGV-1507258_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1507258_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1507258_10	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-1507258_10	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1507258_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-1507258_10	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1507258_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1507258_10	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1507258_11	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-1507258_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1507258_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1507258_12	UniRef90	UniRef90_R7DAW4	Single-stranded DNA-binding protein	NA
UHGV-1507258_12	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1507258_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1507258_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1507258_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1507258_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1507258_12	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1507258_14	PHROG	phrog_21723	NA	unknown function
UHGV-1507258_14	UniRef90	UniRef90_A0A4R1AQA5	30S ribosomal protein S13	NA
UHGV-1507258_14	eggNOG-mapper	1033730.CAHG01000016_gene599	integration host factor	NA
UHGV-1507258_14	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-1507258_14	COG	COG0099	Ribosomal protein S13	NA
UHGV-1507258_14	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-1507258_17	KOfam	K14059	int; integrase	NA
UHGV-1507258_17	PHROG	phrog_1	integrase	integration and excision
UHGV-1507258_17	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-1507258_17	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-1507258_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1507258_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1507258_17	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1507258_22	PHROG	phrog_1689	nucleotide kinase	other
UHGV-1507258_22	UniRef90	UniRef90_UPI001C3C4347	NA	NA
UHGV-1507258_22	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-1507258_22	Pfam	PF11753	NA	DUF3310
UHGV-1507258_24	PHROG	phrog_24658	NA	unknown function
UHGV-1507258_24	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-1507258_25	PHROG	phrog_24189	NA	unknown function
UHGV-1507258_25	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-1507258_25	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-1507258_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1507258_25	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-1507258_27	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-1507258_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1507258_30	UniRef90	UniRef90_UPI00189C3775	helix-turn-helix domain-containing protein	NA
UHGV-1507258_30	eggNOG-mapper	521095.Apar_0552	sequence-specific DNA binding	NA
UHGV-1507258_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507258_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1507258_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1507258_31	PHROG	phrog_7396	NA	unknown function
UHGV-1507258_31	UniRef90	UniRef90_UPI0018993509	helix-turn-helix domain-containing protein	NA
UHGV-1507258_31	eggNOG-mapper	471855.Shel_25910	AbrB family	NA
UHGV-1507258_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507258_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1507258_32	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1507258_32	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1507258_32	UniRef90	UniRef90_R7D9M3	Exonuclease domain-containing protein	NA
UHGV-1507258_32	eggNOG-mapper	428126.CLOSPI_00015	SWIM zinc finger	NA
UHGV-1507258_32	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1507258_32	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1507258_32	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1507258_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1507258_33	PHROG	phrog_95	integrase	integration and excision
UHGV-1507258_33	UniRef90	UniRef90_UPI00189B55FE	recombinase family protein	NA
UHGV-1507258_33	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-1507258_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1507258_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-1507258_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1507258_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1507258_33	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-1507258_34	KOfam	K07273	acm; lysozyme	NA
UHGV-1507258_34	PHROG	phrog_291	endolysin	lysis
UHGV-1507258_34	UniRef90	UniRef90_A0A1Y3UHU8	LysM domain-containing protein	NA
UHGV-1507258_34	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-1507258_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1507258_34	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1507258_34	Pfam	PF01476	LysM domain	LysM
UHGV-1507258_34	COG	COG1388	LysM repeat	NA
UHGV-1507258_34	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1507258_35	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-1507258_35	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-1507258_35	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1507258_35	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-1507258_35	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-1507258_36	PHROG	phrog_10091	holin	lysis
UHGV-1507258_36	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-1507258_36	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-1507258_36	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1507258_36	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1507258_36	COG	COG5546	NA	NA
UHGV-1507258_36	Structural annotation	COG5546	NA	NA
UHGV-1507258_38	PHROG	phrog_18593	NA	unknown function
UHGV-1507258_38	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-1507258_38	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1507258_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1507258_38	Structural annotation	PF14600	NA	NA
UHGV-1507258_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1507258_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1507258_39	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-1507258_39	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1507258_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1507258_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1507258_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1507258_39	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1507258_40	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-1507258_40	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-1507258_41	UniRef90	UniRef90_UPI00189DCC7C	NA	NA
UHGV-1507258_41	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-1507258_41	Pfam	PF19789	NA	DUF6273
UHGV-1507258_41	Structural annotation	PF19789	NA	NA
UHGV-1507258_42	PHROG	phrog_19280	NA	unknown function
UHGV-1507258_42	UniRef90	UniRef90_UPI00189E73EF	BppU family phage baseplate upper protein	NA
UHGV-1507258_42	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-1507258_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1507258_42	Structural annotation	PF10651, NF040788	NA	NA
UHGV-1507258_43	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-1507258_44	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1507258_44	UniRef90	UniRef90_A0A1Y4GBQ8	Prophage_tail domain-containing protein	NA
UHGV-1507258_44	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-1507258_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1507258_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1507258_44	COG	COG4926	Phage-related protein	NA
UHGV-1507258_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1507258_45	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1507258_45	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-1507258_45	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-1507258_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1507258_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1507258_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-1507258_45	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1507258_46	PHROG	phrog_23464	NA	unknown function
UHGV-1507258_46	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-1507258_46	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-1507258_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1507258_46	Structural annotation	COG5280	NA	NA
UHGV-1507258_47	Structural annotation	PF12363	NA	NA
UHGV-1507258_48	PHROG	phrog_88	major tail protein	tail
UHGV-1507258_48	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-1507258_48	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-1507258_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1507258_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1507258_49	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-1507258_49	Structural annotation	PF05657	NA	NA
UHGV-1507258_50	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-1507258_50	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1507258_51	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1507258_51	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-1507258_51	eggNOG-mapper	1121423.JONT01000041_gene949	head-tail adaptor	NA
UHGV-1507258_51	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1507258_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1507258_52	eggNOG-mapper	1094508.Tsac_2423	NA	NA