UHGV-1507263

Genome information

Genome length 33,434 bps

CDS count 49

Completeness 95.03% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-1507263
vOTU ID	vOTU-013973
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0230598
BioSample	SAMN06348177
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.05
Jumbo phage	No

Genome content
Genome length	33,434 bps
GC content	38.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.63%
Average CDS length	620.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1507263_1	UniRef90	UniRef90_A0A373KM46	ATP-binding protein (Fragment)	NA
UHGV-1507263_1	eggNOG-mapper	1321782.HMPREF1986_01546	nuclear chromosome segregation	NA
UHGV-1507263_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1507263_3	PHROG	phrog_3634	NA	unknown function
UHGV-1507263_3	UniRef90	UniRef90_UPI00195CBBCF	nucleoside 2-deoxyribosyltransferase	NA
UHGV-1507263_3	eggNOG-mapper	887929.HMP0721_1347	Tetratricopeptide repeat	NA
UHGV-1507263_3	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-1507263_4	eggNOG-mapper	887929.HMP0721_1347	Tetratricopeptide repeat	NA
UHGV-1507263_4	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-1507263_5	KOfam	K14059	int; integrase	NA
UHGV-1507263_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1507263_5	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1507263_5	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1507263_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1507263_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1507263_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1507263_6	eggNOG-mapper	1232447.BAHW02000014_gene830	NA	NA
UHGV-1507263_8	PHROG	phrog_1914	NA	unknown function
UHGV-1507263_8	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1507263_8	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1507263_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1507263_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1507263_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1507263_9	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-1507263_9	eggNOG-mapper	1408823.AXUS01000025_gene2653	NA	NA
UHGV-1507263_9	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-1507263_10	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-1507263_10	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-1507263_12	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-1507263_13	PHROG	phrog_6058	NA	unknown function
UHGV-1507263_13	Structural annotation	NF033787	NA	NA
UHGV-1507263_14	Structural annotation	COG1862	NA	NA
UHGV-1507263_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1507263_17	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1507263_17	UniRef90	UniRef90_F3AXU5	ParB domain-containing protein	NA
UHGV-1507263_17	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-1507263_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1507263_17	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1507263_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1507263_17	Structural annotation	PF02195, TIGR00180, COG1475	NA	NA
UHGV-1507263_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1507263_18	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-1507263_18	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-1507263_18	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1507263_18	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1507263_20	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507263_20	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-1507263_20	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-1507263_20	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-1507263_20	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-1507263_20	Structural annotation	PF11112, NF040595	NA	NA
UHGV-1507263_21	PHROG	phrog_824	NA	unknown function
UHGV-1507263_21	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1507263_21	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1507263_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1507263_21	Structural annotation	PF08774	NA	NA
UHGV-1507263_23	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507263_23	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-1507263_23	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1507263_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1507263_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1507263_23	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1507263_24	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-1507263_24	Structural annotation	PF15597	NA	NA
UHGV-1507263_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1507263_27	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-1507263_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1507263_28	PHROG	phrog_31049	NA	unknown function
UHGV-1507263_28	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-1507263_28	Structural annotation	TIGR01636	NA	NA
UHGV-1507263_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507263_29	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-1507263_29	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-1507263_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1507263_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1507263_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1507263_30	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-1507263_30	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-1507263_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1507263_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1507263_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1507263_31	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-1507263_31	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1507263_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1507263_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1507263_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1507263_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1507263_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1507263_32	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1507263_32	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-1507263_32	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-1507263_32	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1507263_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1507263_32	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1507263_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-1507263_33	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-1507263_33	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-1507263_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1507263_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1507263_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1507263_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1507263_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1507263_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1507263_34	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1507263_34	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-1507263_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1507263_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1507263_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1507263_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-1507263_35	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-1507263_35	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1507263_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1507263_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1507263_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1507263_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1507263_36	PHROG	phrog_749	NA	unknown function
UHGV-1507263_36	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-1507263_36	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1507263_37	PHROG	phrog_19734	NA	unknown function
UHGV-1507263_37	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-1507263_37	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-1507263_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1507263_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1507263_38	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1507263_39	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-1507263_39	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1507263_39	Structural annotation	TIGR01725	NA	NA
UHGV-1507263_40	PHROG	phrog_88	major tail protein	tail
UHGV-1507263_40	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-1507263_40	eggNOG-mapper	1235790.C805_01798	phage major tail protein, phi13 family	NA
UHGV-1507263_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1507263_40	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1507263_41	Structural annotation	PF11836	NA	NA
UHGV-1507263_42	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1507263_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1507263_42	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-1507263_42	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1507263_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1507263_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1507263_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1507263_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1507263_43	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-1507263_43	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-1507263_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-1507263_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1507263_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1507263_44	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-1507263_44	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-1507263_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1507263_44	COG	COG1511	NA	NA
UHGV-1507263_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1507263_45	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-1507263_45	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-1507263_47	PHROG	phrog_1863	NA	unknown function
UHGV-1507263_47	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-1507263_47	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1507263_48	PHROG	phrog_443	holin	lysis
UHGV-1507263_48	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-1507263_48	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-1507263_48	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1507263_48	Structural annotation	PF16945	NA	NA
UHGV-1507263_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1507263_49	PHROG	phrog_20388	endolysin	lysis
UHGV-1507263_49	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1507263_49	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1507263_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1507263_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1507263_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1507263_49	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA