UHGV-1507301

Genome information

Genome length 31,088 bps

CDS count 45

Completeness 77.13% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1507301
vOTU ID	vOTU-036127
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0226020
BioSample	SAMEA2784473
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.81
Jumbo phage	No

Genome content
Genome length	31,088 bps
GC content	39.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.24%
Average CDS length	648.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1507301_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1507301_1	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-1507301_1	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-1507301_1	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1507301_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1507301_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1507301_1	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1507301_1	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1507301_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1507301_2	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-1507301_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1507301_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1507301_2	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1507301_3	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1507301_3	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1507301_3	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-1507301_3	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1507301_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1507301_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1507301_3	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1507301_5	PHROG	phrog_88	major tail protein	tail
UHGV-1507301_5	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1507301_5	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-1507301_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1507301_5	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1507301_6	PHROG	phrog_78	tail terminator	connector
UHGV-1507301_6	Structural annotation	PF05657	NA	NA
UHGV-1507301_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1507301_7	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-1507301_7	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-1507301_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1507301_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1507301_7	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1507301_8	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-1507301_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1507301_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1507301_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1507301_9	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-1507301_9	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1507301_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1507301_9	Structural annotation	PF05135	NA	NA
UHGV-1507301_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1507301_10	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1507301_10	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-1507301_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1507301_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1507301_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1507301_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1507301_10	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1507301_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1507301_11	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-1507301_11	eggNOG-mapper	1260356.D920_01737	NA	NA
UHGV-1507301_11	Pfam	PF14265	NA	DUF4355
UHGV-1507301_11	Structural annotation	PF14265	NA	NA
UHGV-1507301_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1507301_13	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-1507301_13	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1507301_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1507301_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1507301_13	COG	COG2369	NA	NA
UHGV-1507301_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1507301_14	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-1507301_14	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1507301_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1507301_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1507301_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1507301_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1507301_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1507301_15	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-1507301_15	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-1507301_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1507301_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1507301_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1507301_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-1507301_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1507301_16	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1507301_16	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1507301_16	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-1507301_16	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-1507301_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1507301_16	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1507301_16	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1507301_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1507301_17	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-1507301_17	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-1507301_17	Structural annotation	PF07374	NA	NA
UHGV-1507301_21	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-1507301_24	PHROG	phrog_6802	NA	unknown function
UHGV-1507301_24	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-1507301_24	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1507301_25	PHROG	phrog_419	NA	unknown function
UHGV-1507301_25	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-1507301_25	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-1507301_25	Structural annotation	PF14083	NA	NA
UHGV-1507301_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1507301_27	UniRef90	UniRef90_R6MU33	VRR-NUC domain-containing protein	NA
UHGV-1507301_27	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-1507301_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1507301_27	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-1507301_27	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1507301_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1507301_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1507301_28	UniRef90	UniRef90_A0A416CVQ0	ATP-dependent helicase	NA
UHGV-1507301_28	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-1507301_28	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1507301_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1507301_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1507301_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1507301_28	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1507301_29	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1507301_29	UniRef90	UniRef90_A0A1C6FXN2	Superfamily II helicase and inactivated derivatives	NA
UHGV-1507301_29	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-1507301_29	Pfam	PF06048	NA	DUF927
UHGV-1507301_29	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1507301_29	COG	COG5519	NA	NA
UHGV-1507301_29	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1507301_30	PHROG	phrog_18107	NA	unknown function
UHGV-1507301_30	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-1507301_30	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-1507301_30	Pfam	PF05037	NA	DUF669
UHGV-1507301_30	Structural annotation	PF05037	NA	NA
UHGV-1507301_31	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1507301_31	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-1507301_31	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-1507301_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-1507301_31	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1507301_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1507301_32	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-1507301_32	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-1507301_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1507301_32	Structural annotation	PF05565	NA	NA
UHGV-1507301_33	PHROG	phrog_1029	NA	unknown function
UHGV-1507301_33	eggNOG-mapper	349161.Dred_1186	NA	NA
UHGV-1507301_33	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1507301_34	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1507301_34	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1507301_34	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1507301_35	Structural annotation	PF17574	NA	NA
UHGV-1507301_36	Structural annotation	PF10922	NA	NA
UHGV-1507301_40	UniRef90	UniRef90_A0A1C6FWP6	Helix-turn-helix domain	NA
UHGV-1507301_40	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1507301_40	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1507301_40	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1507301_42	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-1507301_42	UniRef90	UniRef90_A0A7X5R6L6	NA	NA
UHGV-1507301_42	Structural annotation	PF11195	NA	NA
UHGV-1507301_44	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1507301_44	UniRef90	UniRef90_A0A6N8BAQ5	Helix-turn-helix transcriptional regulator	NA
UHGV-1507301_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507301_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1507301_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1507301_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1507301_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1507301_45	UniRef90	UniRef90_A0A1C6FWX3	LexA repressor	NA
UHGV-1507301_45	eggNOG-mapper	1235799.C818_03510	Peptidase S24-like	NA
UHGV-1507301_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1507301_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507301_45	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA