UHGV-1507329

Genome information

Genome length 30,476 bps

CDS count 53

Completeness 98.30% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-1507329
vOTU ID	vOTU-061603
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0220432
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.35
Jumbo phage	No

Genome content
Genome length	30,476 bps
GC content	40.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.42%
Average CDS length	528.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1507329_1	UniRef90	UniRef90_A0A223ATJ2	HTH cro/C1-type domain-containing protein	NA
UHGV-1507329_1	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-1507329_1	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1507329_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1507329_2	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-1507329_4	KOfam	K14059	int; integrase	NA
UHGV-1507329_4	PHROG	phrog_1	integrase	integration and excision
UHGV-1507329_4	UniRef90	UniRef90_A0A2S0L5I5	Tyr recombinase domain-containing protein	NA
UHGV-1507329_4	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-1507329_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1507329_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1507329_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1507329_4	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1507329_5	PHROG	phrog_5783	NA	unknown function
UHGV-1507329_5	UniRef90	UniRef90_UPI0010308ECD	NYN domain-containing protein	NA
UHGV-1507329_5	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-1507329_5	Pfam	PF01936	NYN domain	NYN
UHGV-1507329_5	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1507329_5	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1507329_6	UniRef90	UniRef90_A0A086ZQY8	Putative lipoprotein	NA
UHGV-1507329_6	eggNOG-mapper	1105029.HMPREF1137_1911	NA	NA
UHGV-1507329_6	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-1507329_7	Structural annotation	PF06114	NA	NA
UHGV-1507329_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1507329_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1507329_8	UniRef90	UniRef90_UPI001D05EDBA	helix-turn-helix domain-containing protein	NA
UHGV-1507329_8	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-1507329_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1507329_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507329_8	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-1507329_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1507329_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1507329_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1507329_9	UniRef90	UniRef90_UPI001BE45F5C	helix-turn-helix domain-containing protein	NA
UHGV-1507329_9	eggNOG-mapper	1158602.I590_02948	Helix-turn-helix XRE-family like proteins	NA
UHGV-1507329_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1507329_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1507329_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1507329_10	Structural annotation	NF040990	NA	NA
UHGV-1507329_16	PHROG	phrog_7566	NA	unknown function
UHGV-1507329_16	eggNOG-mapper	1410650.JHWL01000003_gene2846	NA	NA
UHGV-1507329_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1507329_20	UniRef90	UniRef90_A0A2S0L5I7	MazG domain-containing protein	NA
UHGV-1507329_20	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-1507329_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1507329_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-1507329_21	UniRef90	UniRef90_UPI000F8C5AD3	NA	NA
UHGV-1507329_21	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-1507329_21	Pfam	PF11753	NA	DUF3310
UHGV-1507329_21	Structural annotation	PF11753	NA	NA
UHGV-1507329_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1507329_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1507329_22	UniRef90	UniRef90_UPI00046534C2	DNA cytosine methyltransferase	NA
UHGV-1507329_22	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1507329_22	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1507329_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1507329_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1507329_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1507329_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1507329_23	PHROG	phrog_918	NA	unknown function
UHGV-1507329_23	UniRef90	UniRef90_UPI0010308CF9	NA	NA
UHGV-1507329_23	eggNOG-mapper	1321782.HMPREF1986_00359	NA	NA
UHGV-1507329_23	Pfam	PF19791	NA	DUF6275
UHGV-1507329_23	Structural annotation	PF19791	NA	NA
UHGV-1507329_24	UniRef90	UniRef90_UPI000403EAB4	NA	NA
UHGV-1507329_24	Pfam	PF04448	NA	DUF551
UHGV-1507329_25	PHROG	phrog_98	NA	unknown function
UHGV-1507329_25	UniRef90	UniRef90_E5BEY7	YopX domain-containing protein	NA
UHGV-1507329_25	eggNOG-mapper	469604.HMPREF0946_00840	YopX protein	NA
UHGV-1507329_25	Pfam	PF09643	YopX protein	YopX
UHGV-1507329_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1507329_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1507329_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1507329_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1507329_27	UniRef90	UniRef90_A0A2S0L5J3	Single-stranded DNA-binding protein	NA
UHGV-1507329_27	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1507329_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1507329_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1507329_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1507329_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1507329_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1507329_28	PHROG	phrog_33451	NA	unknown function
UHGV-1507329_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1507329_31	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-1507329_31	eggNOG-mapper	936375.HMPREF1152_0670	NA	NA
UHGV-1507329_31	Structural annotation	PF21578	NA	NA
UHGV-1507329_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1507329_32	UniRef90	UniRef90_J5WFY5	PF07374 family protein	NA
UHGV-1507329_32	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1507329_32	Pfam	PF07374	NA	DUF1492
UHGV-1507329_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1507329_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1507329_33	PHROG	phrog_21498	NA	unknown function
UHGV-1507329_33	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-1507329_33	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1507329_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1507329_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1507329_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1507329_33	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG5119	NA	NA
UHGV-1507329_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1507329_34	UniRef90	UniRef90_UPI00138A20ED	helix-turn-helix domain-containing protein	NA
UHGV-1507329_34	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-1507329_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1507329_34	Structural annotation	PF07141	NA	NA
UHGV-1507329_35	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1507329_35	UniRef90	UniRef90_A0A0U1L0W9	Prophage LambdaBa04, Gp54	NA
UHGV-1507329_35	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-1507329_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1507329_35	Pfam	PF13671	AAA domain	AAA_33
UHGV-1507329_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1507329_35	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1507329_36	eggNOG-mapper	1123288.SOV_2c03670	NA	NA
UHGV-1507329_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1507329_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1507329_37	UniRef90	UniRef90_A0A1M6DQA4	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1507329_37	eggNOG-mapper	1123288.SOV_2c03650	Phage Terminase	NA
UHGV-1507329_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1507329_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1507329_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1507329_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1507329_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-1507329_38	UniRef90	UniRef90_A0A1M6DQ94	Phage portal protein, HK97 family	NA
UHGV-1507329_38	eggNOG-mapper	1123288.SOV_2c03640	Phage portal protein	NA
UHGV-1507329_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1507329_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1507329_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1507329_39	KOfam	K06904	NA	NA
UHGV-1507329_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1507329_39	UniRef90	UniRef90_A0A892APL8	HK97 family phage prohead protease	NA
UHGV-1507329_39	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-1507329_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1507329_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1507329_39	COG	COG3740	Phage head maturation protease	NA
UHGV-1507329_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1507329_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-1507329_40	UniRef90	UniRef90_A0A7G9W8B7	Phage major capsid protein	NA
UHGV-1507329_40	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-1507329_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1507329_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1507329_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1507329_42	PHROG	phrog_32328	NA	unknown function
UHGV-1507329_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1507329_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1507329_44	Structural annotation	TIGR01725	NA	NA
UHGV-1507329_45	PHROG	phrog_88	major tail protein	tail
UHGV-1507329_45	UniRef90	UniRef90_A0A373ZCY5	Phage tail protein	NA
UHGV-1507329_45	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1507329_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1507329_45	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1507329_46	PHROG	phrog_709	NA	unknown function
UHGV-1507329_46	eggNOG-mapper	1122146.AUHP01000010_gene1064	NA	NA
UHGV-1507329_46	Structural annotation	PF11836	NA	NA
UHGV-1507329_47	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1507329_47	UniRef90	UniRef90_A0A644VK59	PhageMin_Tail domain-containing protein	NA
UHGV-1507329_47	eggNOG-mapper	1123263.AUKY01000046_gene477	Phage tail tape measure protein, TP901 family	NA
UHGV-1507329_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1507329_47	Structural annotation	COG5280	NA	NA
UHGV-1507329_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1507329_48	UniRef90	UniRef90_UPI0009854788	phage tail family protein	NA
UHGV-1507329_48	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1507329_49	PHROG	phrog_538	minor tail protein	tail
UHGV-1507329_49	UniRef90	UniRef90_A0A1I1Y2T7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1507329_49	eggNOG-mapper	1449338.JQLU01000005_gene3628	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1507329_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1507329_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1507329_50	PHROG	phrog_1220	head protein	head and packaging
UHGV-1507329_50	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-1507329_50	eggNOG-mapper	936375.HMPREF1152_0017	NA	NA
UHGV-1507329_50	Structural annotation	PF20747	NA	NA
UHGV-1507329_52	PHROG	phrog_1009	NA	unknown function
UHGV-1507329_53	PHROG	phrog_1129	holin	lysis
UHGV-1507329_53	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-1507329_53	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1507329_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1507329_53	Structural annotation	PF06946	NA	NA