UHGV-1509578

Genome information

vOTU vOTU-020182

Genome length 31,279 bps

CDS count 49

Completeness 88.21% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-1509578
vOTU ID	vOTU-020182
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0253658
BioSample	SAMN00792029
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.54
Jumbo phage	No

Genome content
Genome length	31,279 bps
GC content	53.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.99%
Average CDS length	590.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1509578_1	PHROG	phrog_1129	holin	lysis
UHGV-1509578_1	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-1509578_1	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1509578_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1509578_1	Structural annotation	PF06946	NA	NA
UHGV-1509578_2	PHROG	phrog_4105	NA	unknown function
UHGV-1509578_2	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1509578_3	PHROG	phrog_11037	NA	unknown function
UHGV-1509578_3	UniRef90	UniRef90_A0A6I3QQJ9	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-1509578_3	eggNOG-mapper	665956.HMPREF1032_03271	NA	NA
UHGV-1509578_3	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1509578_4	Structural annotation	PF11514	NA	NA
UHGV-1509578_5	Structural annotation	PF21253, NF038128	NA	NA
UHGV-1509578_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-1509578_6	UniRef90	UniRef90_A0A1Y4GY33	Collar domain-containing protein	NA
UHGV-1509578_6	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-1509578_6	Structural annotation	PF21567	NA	NA
UHGV-1509578_7	PHROG	phrog_538	minor tail protein	tail
UHGV-1509578_7	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1509578_7	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1509578_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1509578_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1509578_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1509578_8	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-1509578_8	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-1509578_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1509578_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1509578_9	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-1509578_9	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-1509578_9	COG	COG1511	NA	NA
UHGV-1509578_9	Structural annotation	NF003615, COG3006	NA	NA
UHGV-1509578_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1509578_10	UniRef90	UniRef90_A0A0R1K4I1	HNHc domain-containing protein	NA
UHGV-1509578_10	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-1509578_10	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1509578_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1509578_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1509578_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1509578_11	UniRef90	UniRef90_A0A0R1K502	Phage tape measure protein	NA
UHGV-1509578_11	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-1509578_11	COG	COG1511	NA	NA
UHGV-1509578_11	Structural annotation	PF20155	NA	NA
UHGV-1509578_12	PHROG	phrog_1633	NA	unknown function
UHGV-1509578_12	UniRef90	UniRef90_UPI001C392A95	NA	NA
UHGV-1509578_12	eggNOG-mapper	665950.HMPREF1025_02523	NA	NA
UHGV-1509578_12	Pfam	PF17318	NA	DUF5361
UHGV-1509578_12	Structural annotation	PF17318	NA	NA
UHGV-1509578_13	PHROG	phrog_1526	NA	unknown function
UHGV-1509578_13	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-1509578_14	PHROG	phrog_117	major tail protein	tail
UHGV-1509578_14	UniRef90	UniRef90_A0A316PMT1	Phage tail protein	NA
UHGV-1509578_14	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-1509578_14	COG	COG5492	NA	NA
UHGV-1509578_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1509578_15	PHROG	phrog_123	tail terminator	connector
UHGV-1509578_15	eggNOG-mapper	663952.SDD27957_07240	NA	NA
UHGV-1509578_15	Structural annotation	PF06141	NA	NA
UHGV-1509578_16	PHROG	phrog_387	neck protein	connector
UHGV-1509578_16	UniRef90	UniRef90_A0A139NAV7	Phage-associated protein	NA
UHGV-1509578_16	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-1509578_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-1509578_17	UniRef90	UniRef90_A0A0R1K4H9	NA	NA
UHGV-1509578_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1509578_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1509578_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1509578_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1509578_18	Structural annotation	PF09355	NA	NA
UHGV-1509578_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1509578_19	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-1509578_19	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-1509578_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1509578_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1509578_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1509578_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1509578_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1509578_20	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-1509578_20	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-1509578_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1509578_20	Structural annotation	PF06810	NA	NA
UHGV-1509578_21	PHROG	phrog_13257	head maturation protease	head and packaging
UHGV-1509578_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1509578_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1509578_21	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1509578_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1509578_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-1509578_22	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-1509578_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1509578_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1509578_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1509578_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-1509578_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-1509578_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1509578_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1509578_24	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1509578_24	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-1509578_24	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1509578_24	Structural annotation	PF01844	NA	NA
UHGV-1509578_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1509578_26	eggNOG-mapper	445972.ANACOL_03353	NA	NA
UHGV-1509578_26	Structural annotation	PF07374	NA	NA
UHGV-1509578_29	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1509578_29	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1509578_29	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1509578_30	PHROG	phrog_38832	NA	unknown function
UHGV-1509578_30	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1509578_31	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-1509578_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1509578_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1509578_34	UniRef90	UniRef90_A0A0N9ZSQ9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1509578_34	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-1509578_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1509578_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1509578_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1509578_35	PHROG	phrog_16304	NA	unknown function
UHGV-1509578_35	UniRef90	UniRef90_G9RRK1	NA	NA
UHGV-1509578_35	Pfam	PF19808	NA	DUF6291
UHGV-1509578_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1509578_36	PHROG	phrog_36563	NA	unknown function
UHGV-1509578_36	eggNOG-mapper	665956.HMPREF1032_03602	NA	NA
UHGV-1509578_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1509578_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1509578_37	UniRef90	UniRef90_A0A1C6GC95	p33	NA
UHGV-1509578_37	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1509578_37	Pfam	PF03837	RecT family	RecT
UHGV-1509578_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1509578_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1509578_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1509578_38	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1509578_38	UniRef90	UniRef90_A0A7X6XAG1	Endonuclease	NA
UHGV-1509578_38	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1509578_38	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1509578_38	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1509578_38	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1509578_38	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1509578_39	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-1509578_41	PHROG	phrog_1733	NA	unknown function
UHGV-1509578_41	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-1509578_41	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-1509578_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1509578_41	Structural annotation	PF03677	NA	NA
UHGV-1509578_45	UniRef90	UniRef90_G9RRJ1	Excisionase family DNA binding domain-containing protein	NA
UHGV-1509578_45	eggNOG-mapper	1218173.BALCAV_0221205	Helix-turn-helix domain	NA
UHGV-1509578_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1509578_45	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1509578_46	UniRef90	UniRef90_A0A3A6JSY4	XRE family transcriptional regulator	NA
UHGV-1509578_46	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1509578_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1509578_46	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-1509578_47	PHROG	phrog_1914	NA	unknown function
UHGV-1509578_47	UniRef90	UniRef90_G9RRJ0	Peptidase_M78 domain-containing protein	NA
UHGV-1509578_47	eggNOG-mapper	665956.HMPREF1032_03592	NA	NA
UHGV-1509578_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1509578_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1509578_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1509578_48	UniRef90	UniRef90_H7EJ36	TM2 domain-containing protein	NA
UHGV-1509578_48	eggNOG-mapper	742740.HMPREF9474_03106	TM2 domain	NA
UHGV-1509578_48	Pfam	PF05154	TM2 domain	TM2
UHGV-1509578_48	COG	COG2314	NA	NA
UHGV-1509578_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1509578_49	PHROG	phrog_95	integrase	integration and excision
UHGV-1509578_49	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-1509578_49	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-1509578_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1509578_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-1509578_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1509578_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1509578_49	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA