UHGV-1510055

Genome information

Genome length 26,185 bps

CDS count 59

Completeness 70.01% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-1510055
vOTU ID	vOTU-025599
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0195081
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.03
Jumbo phage	No

Genome content
Genome length	26,185 bps
GC content	28.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.63%
Average CDS length	400.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1510055_1	KOfam	K14059	int; integrase	NA
UHGV-1510055_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1510055_1	UniRef90	UniRef90_R5XPH3	Integrase family protein	NA
UHGV-1510055_1	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-1510055_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1510055_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1510055_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1510055_2	PHROG	phrog_87	metallo-protease	other
UHGV-1510055_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-1510055_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1510055_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1510055_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1510055_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1510055_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1510055_4	UniRef90	UniRef90_R7ITV8	Helix-turn-helix domain protein	NA
UHGV-1510055_4	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-1510055_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1510055_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1510055_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1510055_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1510055_5	UniRef90	UniRef90_A0A2C6M758	HTH cro/C1-type domain-containing protein	NA
UHGV-1510055_5	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-1510055_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1510055_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1510055_6	Structural annotation	PF07471, NF033787	NA	NA
UHGV-1510055_10	PHROG	phrog_674	NA	unknown function
UHGV-1510055_10	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1510055_10	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1510055_10	Pfam	PF07083	NA	DUF1351
UHGV-1510055_10	Structural annotation	PF07083	NA	NA
UHGV-1510055_11	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1510055_11	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-1510055_11	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-1510055_11	Pfam	PF03837	RecT family	RecT
UHGV-1510055_11	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1510055_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1510055_11	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1510055_12	eggNOG-mapper	202752.JL53_03675	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1510055_12	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1510055_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1510055_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1510055_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1510055_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1510055_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1510055_14	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-1510055_14	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1510055_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1510055_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1510055_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1510055_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1510055_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1510055_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1510055_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1510055_15	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-1510055_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1510055_16	PHROG	phrog_7566	NA	unknown function
UHGV-1510055_16	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-1510055_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1510055_18	UniRef90	UniRef90_A0A345AQ26	Replication initiation protein	NA
UHGV-1510055_18	eggNOG-mapper	1168613.I1W658_9CAUD	calcium ion binding	NA
UHGV-1510055_19	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1510055_19	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-1510055_20	PHROG	phrog_4973	NA	unknown function
UHGV-1510055_20	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-1510055_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1510055_20	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-1510055_23	Structural annotation	PF15188	NA	NA
UHGV-1510055_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1510055_24	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1510055_24	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1510055_24	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1510055_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1510055_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1510055_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1510055_26	PHROG	phrog_17260	NA	unknown function
UHGV-1510055_26	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-1510055_28	PHROG	phrog_625	NA	unknown function
UHGV-1510055_28	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-1510055_28	eggNOG-mapper	411463.EUBVEN_00477	NA	NA
UHGV-1510055_28	Structural annotation	PF12961	NA	NA
UHGV-1510055_32	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-1510055_32	UniRef90	UniRef90_R7IG32	Orf31	NA
UHGV-1510055_32	eggNOG-mapper	999411.HMPREF1092_03241	NA	NA
UHGV-1510055_36	Structural annotation	PF15188	NA	NA
UHGV-1510055_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1510055_41	PHROG	phrog_2412	NA	unknown function
UHGV-1510055_41	UniRef90	UniRef90_A0A388TCF6	Phage-related protein	NA
UHGV-1510055_41	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-1510055_42	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1510055_42	UniRef90	UniRef90_R7ITA5	Putative terminase large subunit	NA
UHGV-1510055_42	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-1510055_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1510055_42	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1510055_42	COG	COG5410	NA	NA
UHGV-1510055_42	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1510055_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-1510055_43	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-1510055_43	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1510055_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1510055_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1510055_44	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-1510055_45	PHROG	phrog_28652	NA	unknown function
UHGV-1510055_45	eggNOG-mapper	1235798.C817_03480	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1510055_45	COG	COG2369	NA	NA
UHGV-1510055_47	PHROG	phrog_918	NA	unknown function
UHGV-1510055_47	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-1510055_47	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1510055_47	Pfam	PF19791	NA	DUF6275
UHGV-1510055_47	Structural annotation	PF19791	NA	NA
UHGV-1510055_49	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1510055_49	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-1510055_49	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-1510055_49	Pfam	PF14265	NA	DUF4355
UHGV-1510055_49	Structural annotation	PF14265	NA	NA
UHGV-1510055_50	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-1510055_50	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-1510055_50	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1510055_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1510055_50	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1510055_51	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-1510055_51	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1510055_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1510055_55	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-1510055_55	Structural annotation	PF05657	NA	NA
UHGV-1510055_56	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-1510055_56	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1510055_57	Structural annotation	PF12363	NA	NA
UHGV-1510055_59	PHROG	phrog_2700	NA	unknown function
UHGV-1510055_59	UniRef90	UniRef90_UPI001C3DB073	PH domain-containing protein	NA
UHGV-1510055_59	eggNOG-mapper	445335.CBN_1925	Short C-terminal domain	NA
UHGV-1510055_59	Pfam	PF14470	Bacterial PH domain	bPH_3