UHGV-1511739

Genome information

vOTU vOTU-020583

Genome length 28,824 bps

CDS count 49

Completeness 68.08% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-1511739
vOTU ID	vOTU-020583
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0256619
BioSample	SAMEA2158269
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.24
Jumbo phage	No

Genome content
Genome length	28,824 bps
GC content	41.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.29%
Average CDS length	555.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1511739_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1511739_2	UniRef90	UniRef90_E2N830	Peptidase S24-like protein	NA
UHGV-1511739_2	eggNOG-mapper	762984.HMPREF9445_00136	Transcriptional regulator	NA
UHGV-1511739_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1511739_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1511739_4	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-1511739_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1511739_5	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1511739_5	UniRef90	UniRef90_A0A642PVA7	Phage regulatory protein/antirepressor Ant	NA
UHGV-1511739_5	eggNOG-mapper	1268240.ATFI01000007_gene446	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1511739_5	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1511739_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1511739_5	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1511739_5	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1511739_6	UniRef90	UniRef90_A0A412RJF0	DNA-binding protein	NA
UHGV-1511739_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1511739_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1511739_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1511739_7	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-1511739_9	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1511739_9	UniRef90	UniRef90_A0A0P0GQT0	Bacteriophage Lambda NinG protein	NA
UHGV-1511739_9	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-1511739_9	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1511739_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1511739_9	Structural annotation	PF05766	NA	NA
UHGV-1511739_10	PHROG	phrog_19572	NA	unknown function
UHGV-1511739_10	UniRef90	UniRef90_A0A3A5QPD2	NA	NA
UHGV-1511739_10	eggNOG-mapper	1268240.ATFI01000007_gene441	COG NOG14445 non supervised orthologous group	NA
UHGV-1511739_10	Pfam	PF14902	NA	DUF4494
UHGV-1511739_10	Structural annotation	PF14902	NA	NA
UHGV-1511739_11	eggNOG-mapper	1268240.ATFI01000007_gene440	NA	NA
UHGV-1511739_11	Structural annotation	PF05144, MF_00408, TIGR01629, COG2946	NA	NA
UHGV-1511739_12	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1511739_12	UniRef90	UniRef90_A0A412RJF5	NA	NA
UHGV-1511739_12	eggNOG-mapper	1305737.JAFX01000001_gene3073	NA	NA
UHGV-1511739_12	Pfam	PF11325	NA	DUF3127
UHGV-1511739_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1511739_12	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-1511739_13	UniRef90	UniRef90_F3PKH6	Conserved domain protein	NA
UHGV-1511739_13	eggNOG-mapper	1268240.ATFI01000007_gene438	NA	NA
UHGV-1511739_13	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-1511739_14	PHROG	phrog_19578	NA	unknown function
UHGV-1511739_14	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-1511739_14	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-1511739_15	PHROG	phrog_7445	NA	unknown function
UHGV-1511739_15	UniRef90	UniRef90_UPI001F2A35D2	PcfK-like family protein	NA
UHGV-1511739_15	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-1511739_15	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1511739_15	Structural annotation	PF14058	NA	NA
UHGV-1511739_16	PHROG	phrog_8470	NA	unknown function
UHGV-1511739_16	UniRef90	UniRef90_A0A1M6FJV9	PcfJ-like protein	NA
UHGV-1511739_16	eggNOG-mapper	1236514.BAKL01000015_gene1645	NA	NA
UHGV-1511739_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1511739_16	Structural annotation	PF14284	NA	NA
UHGV-1511739_17	eggNOG-mapper	1122971.BAME01000058_gene4471	NA	NA
UHGV-1511739_17	Structural annotation	PF18275	NA	NA
UHGV-1511739_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1511739_18	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1511739_18	UniRef90	UniRef90_I9PVD0	Methyltransferase	NA
UHGV-1511739_18	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1511739_18	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1511739_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1511739_18	COG	COG0863	DNA modification methylase	NA
UHGV-1511739_18	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1511739_19	PHROG	phrog_874	NA	unknown function
UHGV-1511739_19	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1511739_19	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1511739_22	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-1511739_22	Structural annotation	TIGR01453	NA	NA
UHGV-1511739_24	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1511739_24	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1511739_24	UniRef90	UniRef90_U2CMA3	Resolvase protein	NA
UHGV-1511739_24	eggNOG-mapper	1235813.JCM10003_629	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1511739_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1511739_24	NCBIFam	NF009949.0	master DNA invertase Mpi family serine-type recombinase	NA
UHGV-1511739_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1511739_24	Structural annotation	PF00239, MF_00489, NF009949, COG1961	NA	NA
UHGV-1511739_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1511739_27	UniRef90	UniRef90_D4VJW8	PAPS_reduct domain-containing protein	NA
UHGV-1511739_27	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-1511739_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1511739_27	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1511739_29	UniRef90	UniRef90_UPI001D0934FC	NA	NA
UHGV-1511739_29	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-1511739_29	Pfam	PF04448	NA	DUF551
UHGV-1511739_29	Structural annotation	PF04448	NA	NA
UHGV-1511739_31	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-1511739_31	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-1511739_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1511739_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1511739_33	UniRef90	UniRef90_A0A412XV49	HNH endonuclease	NA
UHGV-1511739_33	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-1511739_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1511739_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1511739_34	eggNOG-mapper	1268240.ATFI01000007_gene424	NA	NA
UHGV-1511739_34	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1511739_35	UniRef90	UniRef90_A0A1G6G5C7	Fructokinase	NA
UHGV-1511739_35	eggNOG-mapper	1268240.ATFI01000007_gene423	Bacterial periplasmic substrate-binding proteins	NA
UHGV-1511739_35	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-1511739_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1511739_36	UniRef90	UniRef90_E2N802	Phage terminase, small subunit, P27 family	NA
UHGV-1511739_36	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-1511739_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1511739_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1511739_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1511739_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1511739_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1511739_37	UniRef90	UniRef90_A0A0N7IEF9	Phage Terminase	NA
UHGV-1511739_37	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-1511739_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1511739_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1511739_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1511739_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1511739_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-1511739_38	UniRef90	UniRef90_E2N7Z9	Phage portal protein, HK97 family	NA
UHGV-1511739_38	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-1511739_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1511739_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1511739_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1511739_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1511739_39	KOfam	K06904	NA	NA
UHGV-1511739_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1511739_39	UniRef90	UniRef90_E2N7Z8	Phage prohead protease, HK97 family	NA
UHGV-1511739_39	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-1511739_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1511739_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1511739_39	COG	COG3740	Phage head maturation protease	NA
UHGV-1511739_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1511739_40	PHROG	phrog_617	major head protein	head and packaging
UHGV-1511739_40	UniRef90	UniRef90_A0A0P0G9H8	Phage capsid family protein	NA
UHGV-1511739_40	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-1511739_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1511739_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1511739_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1511739_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1511739_41	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1511739_41	UniRef90	UniRef90_A0A0P0GJV8	Phage gp6-like head-tail connector protein	NA
UHGV-1511739_41	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-1511739_41	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1511739_41	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1511739_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1511739_42	UniRef90	UniRef90_A0A3E5G5Y6	Head-tail adaptor protein	NA
UHGV-1511739_42	eggNOG-mapper	1268240.ATFI01000007_gene416	Phage head-tail joining protein	NA
UHGV-1511739_42	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1511739_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1511739_43	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-1511739_43	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-1511739_43	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-1511739_44	UniRef90	UniRef90_A0A412XV62	NA	NA
UHGV-1511739_44	eggNOG-mapper	1268240.ATFI01000007_gene414	NA	NA
UHGV-1511739_44	Structural annotation	PF11367, COG5003	NA	NA
UHGV-1511739_45	PHROG	phrog_1407	major tail protein	tail
UHGV-1511739_45	UniRef90	UniRef90_A0A0N7IEG0	Phage major tail protein 2	NA
UHGV-1511739_45	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-1511739_45	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1511739_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1511739_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1511739_46	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-1511739_46	UniRef90	UniRef90_UPI000FDCB74F	antA/AntB antirepressor family protein	NA
UHGV-1511739_46	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-1511739_46	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1511739_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1511739_46	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1511739_46	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1511739_47	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-1511739_48	PHROG	phrog_26705	NA	unknown function
UHGV-1511739_48	UniRef90	UniRef90_E2N7Y7	PhageMin_Tail domain-containing protein (Fragment)	NA
UHGV-1511739_48	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-1511739_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1511739_48	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-1511739_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1511739_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1511739_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1511739_49	PHROG	phrog_1492	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1511739_49	UniRef90	UniRef90_A0A3B9E2C5	NUMOD4 domain-containing protein (Fragment)	NA
UHGV-1511739_49	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1511739_49	Pfam	PF07463	NUMOD4 motif	NUMOD4