UHGV-1512132

Genome information

Genome length 59,811 bps

CDS count 92

Completeness 80.87% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1512132
vOTU ID	vOTU-036203
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0370613
BioSample	SAMEA4545320
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.38
Jumbo phage	No

Genome content
Genome length	59,811 bps
GC content	42.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	90.54%
Average CDS length	591.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1512132_1	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_1	UniRef90	UniRef90_A0A6A7UPL9	AAA family ATPase	NA
UHGV-1512132_1	eggNOG-mapper	343509.SG1827	AAA domain	NA
UHGV-1512132_1	Pfam	PF13479	AAA domain	AAA_24
UHGV-1512132_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1512132_1	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1512132_2	Structural annotation	PF12684, TIGR04256, COG5377	NA	NA
UHGV-1512132_3	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_3	UniRef90	UniRef90_A0A3C0D6Y6	Single-stranded DNA-binding protein	NA
UHGV-1512132_3	eggNOG-mapper	762968.HMPREF9441_02241	NA	NA
UHGV-1512132_3	Pfam	PF11325	NA	DUF3127
UHGV-1512132_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1512132_3	Structural annotation	PF11325, MF_00984, NF005242, COG2965	NA	NA
UHGV-1512132_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1512132_4	eggNOG-mapper	679189.HMPREF9019_0912	NA	NA
UHGV-1512132_4	Pfam	PF05772	NinB protein	NinB
UHGV-1512132_4	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1512132_5	PHROG	phrog_26490	NA	unknown function
UHGV-1512132_5	eggNOG-mapper	679189.HMPREF9019_0913	NA	NA
UHGV-1512132_6	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1512132_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1512132_6	UniRef90	UniRef90_A0A6A7UPC9	DEAD/DEAH box helicase	NA
UHGV-1512132_6	eggNOG-mapper	679189.HMPREF9019_0914	Helicase C-terminal domain protein	NA
UHGV-1512132_6	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1512132_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1512132_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1512132_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1512132_6	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1512132_8	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1512132_8	UniRef90	UniRef90_A0A6A7UPH5	Recombinase	NA
UHGV-1512132_8	eggNOG-mapper	679189.HMPREF9019_0919	NA	NA
UHGV-1512132_8	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1512132_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1512132_10	PHROG	phrog_19415	NA	unknown function
UHGV-1512132_10	eggNOG-mapper	762984.HMPREF9445_00153	DnaD domain protein	NA
UHGV-1512132_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1512132_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1512132_11	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1512132_11	UniRef90	UniRef90_A0A6A7UPD3	Bac_DnaA domain-containing protein	NA
UHGV-1512132_11	eggNOG-mapper	445970.ALIPUT_02688	NA	NA
UHGV-1512132_11	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1512132_11	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1512132_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1512132_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1512132_12	UniRef90	UniRef90_A0A6A7VTE7	DNA helicase	NA
UHGV-1512132_12	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-1512132_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1512132_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1512132_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-1512132_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1512132_16	eggNOG-mapper	272562.CA_C1147	NA	NA
UHGV-1512132_20	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-1512132_20	Structural annotation	PF14207	NA	NA
UHGV-1512132_22	PHROG	phrog_7445	NA	unknown function
UHGV-1512132_22	UniRef90	UniRef90_UPI0008DA8265	PcfK-like family protein	NA
UHGV-1512132_22	eggNOG-mapper	679189.HMPREF9019_0933	NA	NA
UHGV-1512132_22	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1512132_22	Structural annotation	PF14058	NA	NA
UHGV-1512132_23	UniRef90	UniRef90_A0A7K0JHE2	PcfJ domain-containing protein	NA
UHGV-1512132_23	eggNOG-mapper	1433126.BN938_0534	PcfJ-like protein	NA
UHGV-1512132_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1512132_24	UniRef90	UniRef90_A0A8D4VTW4	Methyltransf_25 domain-containing protein	NA
UHGV-1512132_24	eggNOG-mapper	1280685.AUKC01000024_gene1115	NA	NA
UHGV-1512132_24	Structural annotation	PF05891, MF_02100, TIGR03587, COG4976	NA	NA
UHGV-1512132_25	KOfam	K17462	yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-]	NA
UHGV-1512132_25	UniRef90	UniRef90_A0A3C0D6M0	Methyltransf_25 domain-containing protein	NA
UHGV-1512132_25	Pfam	PF08242	Methyltransferase domain	Methyltransf_12
UHGV-1512132_25	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1512132_25	Structural annotation	PF01209, MF_02100, TIGR01934, COG2226	NA	NA
UHGV-1512132_26	Structural annotation	PF03071, NF038299, COG3306	NA	NA
UHGV-1512132_27	UniRef90	UniRef90_A0A1H6M1F4	S-adenosyl-l-methionine-dependent methyltransferase	NA
UHGV-1512132_27	eggNOG-mapper	107636.JQNK01000009_gene1996	NA	NA
UHGV-1512132_27	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1512132_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1512132_29	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_29	UniRef90	UniRef90_A0A6A7UPG9	ParB domain-containing protein	NA
UHGV-1512132_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1512132_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1512132_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1512132_29	Structural annotation	PF02195, TIGR04285, COG1475	NA	NA
UHGV-1512132_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1512132_30	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1512132_30	UniRef90	UniRef90_A0A3C0D8M4	PAPS_reduct domain-containing protein	NA
UHGV-1512132_30	eggNOG-mapper	762984.HMPREF9445_00163	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1512132_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1512132_30	COG	COG3969	NA	NA
UHGV-1512132_30	Structural annotation	PF01507, PF11922, MF_00063, NF006327, COG3969	NA	NA
UHGV-1512132_31	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_31	UniRef90	UniRef90_A0A6A7UPP7	ParB-like nuclease domain-containing protein	NA
UHGV-1512132_31	eggNOG-mapper	762984.HMPREF9445_00164	NA	NA
UHGV-1512132_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1512132_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1512132_31	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1512132_32	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_32	UniRef90	UniRef90_A0A7K0AIL4	ParB domain-containing protein	NA
UHGV-1512132_32	eggNOG-mapper	665956.HMPREF1032_03077	DNA binding	NA
UHGV-1512132_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1512132_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1512132_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1512132_32	Structural annotation	PF02195, MF_02015, TIGR04285, COG5119	NA	NA
UHGV-1512132_33	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1512132_33	UniRef90	UniRef90_A0A3C0D745	ParB domain-containing protein	NA
UHGV-1512132_33	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-1512132_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1512132_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1512132_33	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1512132_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1512132_34	UniRef90	UniRef90_A0A174C6C6	DNA packaging protein	NA
UHGV-1512132_34	eggNOG-mapper	483215.BACFIN_07524	DNA-packaging protein gp3	NA
UHGV-1512132_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1512132_34	Structural annotation	PF16677	NA	NA
UHGV-1512132_35	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1512132_35	UniRef90	UniRef90_A0A7K0AJJ4	Phage terminase large subunit	NA
UHGV-1512132_35	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-1512132_35	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1512132_35	COG	COG5410	NA	NA
UHGV-1512132_35	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1512132_38	UniRef90	UniRef90_A0A6A7VWV1	NA	NA
UHGV-1512132_38	Pfam	PF12957	NA	DUF3846
UHGV-1512132_41	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-1512132_41	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1512132_41	UniRef90	UniRef90_A0A7K0AGH8	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-1512132_41	eggNOG-mapper	1297570.MESS4_510060	dna ligase	NA
UHGV-1512132_41	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-1512132_41	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-1512132_41	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-1512132_41	Structural annotation	PF01068, PF17879, MF_00407, NF006592, COG1793	NA	NA
UHGV-1512132_42	PHROG	phrog_23250	NA	unknown function
UHGV-1512132_42	eggNOG-mapper	449673.BACSTE_02179	NA	NA
UHGV-1512132_44	PHROG	phrog_27819	NA	unknown function
UHGV-1512132_44	UniRef90	UniRef90_UPI000559E706	SHOCT domain-containing protein	NA
UHGV-1512132_44	eggNOG-mapper	999411.HMPREF1092_03312	Short C-terminal domain	NA
UHGV-1512132_46	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-1512132_46	UniRef90	UniRef90_UPI000D0F347D	ADP-ribosyltransferase domain-containing protein	NA
UHGV-1512132_46	eggNOG-mapper	411901.BACCAC_01148	NA	NA
UHGV-1512132_46	Structural annotation	PF03496, PF06152, MF_04139, NF041404	NA	NA
UHGV-1512132_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-1512132_47	UniRef90	UniRef90_A0A6A7USY4	Phage portal protein	NA
UHGV-1512132_47	eggNOG-mapper	411901.BACCAC_01152	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1512132_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1512132_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1512132_53	Structural annotation	PF18195, COG5475	NA	NA
UHGV-1512132_54	PHROG	phrog_28300	NA	unknown function
UHGV-1512132_64	UniRef90	UniRef90_A0A3R5YAH9	NA	NA
UHGV-1512132_64	Pfam	PF04448	NA	DUF551
UHGV-1512132_65	PHROG	phrog_21668	NA	unknown function
UHGV-1512132_69	Structural annotation	PF07509, MF_00403_A, NF003254, COG0048	NA	NA
UHGV-1512132_70	UniRef90	UniRef90_A0A3R6HEN9	NA	NA
UHGV-1512132_70	Pfam	PF11195	NA	DUF2829
UHGV-1512132_70	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1512132_70	Structural annotation	PF11195	NA	NA
UHGV-1512132_72	PHROG	phrog_625	NA	unknown function
UHGV-1512132_72	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-1512132_72	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-1512132_72	Structural annotation	PF12961	NA	NA
UHGV-1512132_75	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1512132_75	Structural annotation	PF13936, PF13613, NF040595	NA	NA
UHGV-1512132_76	KOfam	K01243	mtnN, mtn, pfs; adenosylhomocysteine nucleosidase [EC:3.2.2.9]	NA
UHGV-1512132_76	UniRef90	UniRef90_A0A6A7UPN3	Adenosylhomocysteine nucleosidase	NA
UHGV-1512132_76	eggNOG-mapper	888832.HMPREF9420_1220	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively	NA
UHGV-1512132_76	Pfam	PF01048	Phosphorylase superfamily	PNP_UDP_1
UHGV-1512132_76	NCBIFam	TIGR01704.1	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA
UHGV-1512132_76	COG	COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	NA
UHGV-1512132_76	Structural annotation	PF01048, MF_01684, NF004079, COG0775	NA	NA
UHGV-1512132_77	KOfam	K07173	luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]	NA
UHGV-1512132_77	UniRef90	UniRef90_A0A6A7USL4	S-ribosylhomocysteine lyase	NA
UHGV-1512132_77	eggNOG-mapper	526222.Desal_3750	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)	NA
UHGV-1512132_77	Pfam	PF02664	S-Ribosylhomocysteinase (LuxS)	LuxS
UHGV-1512132_77	NCBIFam	NF002604.0	S-ribosylhomocysteine lyase	NA
UHGV-1512132_77	COG	COG1854	S-ribosylhomocysteine lyase LuxS, autoinducer biosynthesis	NA
UHGV-1512132_77	Structural annotation	PF02664, MF_00091, NF002604, COG1854	NA	NA
UHGV-1512132_78	PHROG	phrog_5824	NA	unknown function
UHGV-1512132_79	PHROG	phrog_38330	NA	unknown function
UHGV-1512132_79	eggNOG-mapper	411901.BACCAC_01144	NA	NA
UHGV-1512132_79	Structural annotation	PF02924	NA	NA
UHGV-1512132_80	PHROG	phrog_29	major head protein	head and packaging
UHGV-1512132_80	UniRef90	UniRef90_UPI000D0FF18B	major capsid protein	NA
UHGV-1512132_80	eggNOG-mapper	411901.BACCAC_01143	Phage major capsid protein E	NA
UHGV-1512132_80	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1512132_80	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-1512132_81	eggNOG-mapper	411901.BACCAC_01142	NA	NA
UHGV-1512132_81	Structural annotation	PF20449	NA	NA
UHGV-1512132_82	eggNOG-mapper	411901.BACCAC_01141	NA	NA
UHGV-1512132_82	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1512132_83	PHROG	phrog_5377	NA	unknown function
UHGV-1512132_83	eggNOG-mapper	679189.HMPREF9019_0962	NA	NA
UHGV-1512132_84	PHROG	phrog_5597	NA	unknown function
UHGV-1512132_84	Structural annotation	PF05657	NA	NA
UHGV-1512132_85	PHROG	phrog_17745	NA	unknown function
UHGV-1512132_85	eggNOG-mapper	411901.BACCAC_01138	NA	NA
UHGV-1512132_85	Structural annotation	PF06199, TIGR01603, COG5437	NA	NA
UHGV-1512132_86	PHROG	phrog_11996	NA	unknown function
UHGV-1512132_86	eggNOG-mapper	679189.HMPREF9019_0964	NA	NA
UHGV-1512132_87	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1512132_87	PHROG	phrog_14295	NA	unknown function
UHGV-1512132_87	UniRef90	UniRef90_UPI001C452B56	tape measure protein	NA
UHGV-1512132_87	eggNOG-mapper	679189.HMPREF9019_0965	NA	NA
UHGV-1512132_87	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1512132_87	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1512132_87	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1512132_88	PHROG	phrog_6305	tail protein	tail
UHGV-1512132_88	eggNOG-mapper	411901.BACCAC_01133	NA	NA
UHGV-1512132_88	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1512132_89	PHROG	phrog_17422	NA	unknown function
UHGV-1512132_89	UniRef90	UniRef90_UPI001CCFC21D	collagen-like protein	NA
UHGV-1512132_89	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-1512132_89	COG	COG4926	Phage-related protein	NA
UHGV-1512132_89	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1512132_91	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1512132_91	PHROG	phrog_32409	tail fiber protein	tail
UHGV-1512132_91	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1512132_91	Structural annotation	PF20942, NF007636, COG2372	NA	NA