UHGV-1512645

Genome information

vOTU vOTU-020752

Genome length 30,451 bps

CDS count 45

Completeness 84.51% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-1512645
vOTU ID	vOTU-020752
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0247802
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.35
Jumbo phage	No

Genome content
Genome length	30,451 bps
GC content	45.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	88.12%
Average CDS length	600.47 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1512645_1	KOfam	K14059	int; integrase	NA
UHGV-1512645_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1512645_1	UniRef90	UniRef90_R5LQJ7	Phage integrase family	NA
UHGV-1512645_1	eggNOG-mapper	1304866.K413DRAFT_3002	Belongs to the 'phage' integrase family	NA
UHGV-1512645_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1512645_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1512645_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1512645_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1512645_2	UniRef90	UniRef90_UPI0018994AC9	TM2 domain-containing protein	NA
UHGV-1512645_2	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-1512645_3	PHROG	phrog_7115	NA	unknown function
UHGV-1512645_3	UniRef90	UniRef90_UPI0018AAEF6B	PH domain-containing protein	NA
UHGV-1512645_3	eggNOG-mapper	321955.AAGP01000040_gene2388	Bacterial PH domain	NA
UHGV-1512645_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1512645_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1512645_4	PHROG	phrog_87	metallo-protease	other
UHGV-1512645_4	UniRef90	UniRef90_R5IRU3	Predicted Zn peptidase	NA
UHGV-1512645_4	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-1512645_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1512645_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1512645_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1512645_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1512645_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1512645_5	UniRef90	UniRef90_R5ILL4	Helix-turn-helix domain protein	NA
UHGV-1512645_5	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-1512645_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1512645_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1512645_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1512645_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1512645_6	UniRef90	UniRef90_A0A396KCA9	XRE family transcriptional regulator	NA
UHGV-1512645_6	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-1512645_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1512645_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1512645_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1512645_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1512645_10	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-1512645_10	PHROG	phrog_200	lipoprotein	other
UHGV-1512645_10	UniRef90	UniRef90_R6Z884	Band 7 protein	NA
UHGV-1512645_10	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-1512645_10	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1512645_10	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1512645_10	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-1512645_11	UniRef90	UniRef90_UPI001BC23C38	Nitrogenase molybdenum-iron protein subunit beta	NA
UHGV-1512645_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1512645_12	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-1512645_12	Structural annotation	PF05772	NA	NA
UHGV-1512645_13	PHROG	phrog_7566	NA	unknown function
UHGV-1512645_13	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-1512645_13	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1512645_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1512645_14	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-1512645_14	eggNOG-mapper	411483.FAEPRAA2165_01886	NA	NA
UHGV-1512645_15	PHROG	phrog_1029	NA	unknown function
UHGV-1512645_15	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-1512645_15	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-1512645_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1512645_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1512645_16	UniRef90	UniRef90_D6DIS5	NA	NA
UHGV-1512645_16	eggNOG-mapper	1120998.AUFC01000030_gene2219	NA	NA
UHGV-1512645_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1512645_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1512645_16	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1512645_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1512645_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1512645_17	UniRef90	UniRef90_A0A1C6HJL9	Primosomal protein DnaI	NA
UHGV-1512645_17	eggNOG-mapper	742740.HMPREF9474_03493	IstB-like ATP binding protein	NA
UHGV-1512645_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1512645_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1512645_17	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1512645_19	Structural annotation	PF04703, MF_01909, NF033788, COG0640	NA	NA
UHGV-1512645_21	PHROG	phrog_15077	NA	unknown function
UHGV-1512645_21	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-1512645_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1512645_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1512645_22	UniRef90	UniRef90_UPI001A2D2F7F	Lar family restriction alleviation protein	NA
UHGV-1512645_22	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-1512645_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1512645_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1512645_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1512645_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1512645_25	UniRef90	UniRef90_UPI001BC026BF	NA	NA
UHGV-1512645_25	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-1512645_25	Pfam	PF04448	NA	DUF551
UHGV-1512645_25	Structural annotation	NF041588	NA	NA
UHGV-1512645_26	PHROG	phrog_12728	NA	unknown function
UHGV-1512645_26	UniRef90	UniRef90_A0A516KMW1	Putative membrane lipoprotein	NA
UHGV-1512645_26	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-1512645_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1512645_27	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-1512645_27	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-1512645_27	Pfam	PF07374	NA	DUF1492
UHGV-1512645_27	Structural annotation	PF04545	NA	NA
UHGV-1512645_29	PHROG	phrog_1066	NA	unknown function
UHGV-1512645_29	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1512645_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1512645_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1512645_30	UniRef90	UniRef90_A0A2T3EZM3	Terminase large subunit	NA
UHGV-1512645_30	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-1512645_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1512645_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1512645_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1512645_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1512645_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1512645_31	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-1512645_31	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1512645_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1512645_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1512645_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1512645_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1512645_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1512645_32	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1512645_32	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1512645_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1512645_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1512645_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1512645_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-1512645_33	UniRef90	UniRef90_UPI001D143532	phage major capsid protein	NA
UHGV-1512645_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1512645_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1512645_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1512645_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1512645_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1512645_34	PHROG	phrog_5223	neck protein	connector
UHGV-1512645_34	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-1512645_34	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-1512645_34	Structural annotation	TIGR01560	NA	NA
UHGV-1512645_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1512645_35	UniRef90	UniRef90_A0A6N9P9M6	Phage head-tail adapter protein	NA
UHGV-1512645_35	eggNOG-mapper	642492.Clole_1861	head-tail adaptor	NA
UHGV-1512645_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1512645_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1512645_36	Structural annotation	TIGR01725	NA	NA
UHGV-1512645_37	Structural annotation	PF06141	NA	NA
UHGV-1512645_38	PHROG	phrog_88	major tail protein	tail
UHGV-1512645_38	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-1512645_38	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-1512645_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1512645_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1512645_41	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-1512645_41	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-1512645_41	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-1512645_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1512645_41	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1512645_42	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1512645_42	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-1512645_42	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1512645_42	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-1512645_43	PHROG	phrog_26795	NA	unknown function
UHGV-1512645_43	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-1512645_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1512645_44	PHROG	phrog_12764	NA	unknown function
UHGV-1512645_44	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-1512645_45	PHROG	phrog_3639	minor tail protein	tail
UHGV-1512645_45	UniRef90	UniRef90_UPI001899CC0D	BppU family phage baseplate upper protein	NA
UHGV-1512645_45	Pfam	PF10651	BppU N-terminal domain	BppU_N