UHGV-1512725

Genome information

Genome length 31,696 bps

CDS count 58

Completeness 72.94% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-1512725
vOTU ID	vOTU-024575
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0225866
BioSample	NA
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.3
Jumbo phage	No

Genome content
Genome length	31,696 bps
GC content	55.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.01%
Average CDS length	524.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1512725_2	PHROG	phrog_30508	NA	unknown function
UHGV-1512725_3	PHROG	phrog_521	tail protein	tail
UHGV-1512725_3	UniRef90	UniRef90_UPI001A9B02CD	NA	NA
UHGV-1512725_3	eggNOG-mapper	742738.HMPREF9460_02532	NA	NA
UHGV-1512725_3	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1512725_3	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1512725_3	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-1512725_4	PHROG	phrog_6	baseplate protein	tail
UHGV-1512725_4	UniRef90	UniRef90_A0A096B737	Baseplate_J domain-containing protein	NA
UHGV-1512725_4	eggNOG-mapper	742738.HMPREF9460_02531	Baseplate J-like protein	NA
UHGV-1512725_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1512725_4	COG	COG3299	NA	NA
UHGV-1512725_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1512725_5	PHROG	phrog_120	baseplate protein	tail
UHGV-1512725_5	UniRef90	UniRef90_UPI00164C7E68	NA	NA
UHGV-1512725_5	eggNOG-mapper	742738.HMPREF9460_02530	NA	NA
UHGV-1512725_5	Pfam	PF10934	NA	DUF2634
UHGV-1512725_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1512725_5	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1512725_6	PHROG	phrog_579	NA	unknown function
UHGV-1512725_6	UniRef90	UniRef90_UPI001D0F2442	NA	NA
UHGV-1512725_6	Pfam	PF10844	NA	DUF2577
UHGV-1512725_6	Structural annotation	PF10844	NA	NA
UHGV-1512725_7	PHROG	phrog_400	tail protein	tail
UHGV-1512725_7	eggNOG-mapper	742738.HMPREF9460_02528	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1512725_7	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1512725_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1512725_8	PHROG	phrog_380	endolysin	lysis
UHGV-1512725_8	UniRef90	UniRef90_A0A841KYF1	LysM repeat protein	NA
UHGV-1512725_8	eggNOG-mapper	742738.HMPREF9460_02527	LysM domain	NA
UHGV-1512725_8	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1512725_8	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-1512725_9	PHROG	phrog_33872	NA	unknown function
UHGV-1512725_9	eggNOG-mapper	445972.ANACOL_01858	NA	NA
UHGV-1512725_10	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1512725_10	UniRef90	UniRef90_UPI001A9A87F9	tape measure protein	NA
UHGV-1512725_10	eggNOG-mapper	742738.HMPREF9460_02526	tape measure	NA
UHGV-1512725_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1512725_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1512725_10	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1512725_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1512725_11	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1512725_11	UniRef90	UniRef90_A0A174CUN9	Phage XkdN-like protein	NA
UHGV-1512725_11	eggNOG-mapper	742738.HMPREF9460_02524	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1512725_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1512725_11	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1512725_12	PHROG	phrog_365	tail protein	tail
UHGV-1512725_12	UniRef90	UniRef90_A0A174V246	Phage-like element PBSX protein xkdM	NA
UHGV-1512725_12	eggNOG-mapper	742738.HMPREF9460_02523	Phage tail tube protein	NA
UHGV-1512725_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1512725_12	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1512725_13	PHROG	phrog_279	tail sheath	tail
UHGV-1512725_13	UniRef90	UniRef90_A0A2V2EK11	Phage tail sheath protein	NA
UHGV-1512725_13	eggNOG-mapper	742738.HMPREF9460_02522	Phage tail sheath C-terminal domain	NA
UHGV-1512725_13	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1512725_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1512725_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1512725_13	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1512725_14	PHROG	phrog_30826	NA	unknown function
UHGV-1512725_15	PHROG	phrog_525	NA	unknown function
UHGV-1512725_15	Pfam	PF20765	NA	DUF6838
UHGV-1512725_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1512725_16	UniRef90	UniRef90_UPI00164CB61C	HK97 gp10 family phage protein	NA
UHGV-1512725_16	eggNOG-mapper	398512.JQKC01000052_gene2665	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1512725_16	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1512725_17	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1512725_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1512725_18	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1512725_18	UniRef90	UniRef90_UPI00164AB123	NA	NA
UHGV-1512725_18	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-1512725_18	Pfam	PF13262	NA	DUF4054
UHGV-1512725_18	Structural annotation	PF13262	NA	NA
UHGV-1512725_19	PHROG	phrog_29824	NA	unknown function
UHGV-1512725_20	PHROG	phrog_264	major head protein	head and packaging
UHGV-1512725_20	UniRef90	UniRef90_UPI00164AAF0B	NA	NA
UHGV-1512725_20	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-1512725_20	Pfam	PF09950	NA	DUF2184
UHGV-1512725_20	COG	COG4834	NA	NA
UHGV-1512725_20	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1512725_21	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-1512725_21	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-1512725_21	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-1512725_21	Structural annotation	PF09956	NA	NA
UHGV-1512725_22	KOfam	K09960	NA	NA
UHGV-1512725_22	PHROG	phrog_16985	NA	unknown function
UHGV-1512725_22	UniRef90	UniRef90_UPI00164BF670	NA	NA
UHGV-1512725_22	eggNOG-mapper	742738.HMPREF9460_02512	NA	NA
UHGV-1512725_22	Pfam	PF09979	NA	DUF2213
UHGV-1512725_22	COG	COG3566	NA	NA
UHGV-1512725_22	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1512725_23	PHROG	phrog_29883	NA	unknown function
UHGV-1512725_23	UniRef90	UniRef90_A0A1Y4L8M4	Rubrerythrin domain-containing protein	NA
UHGV-1512725_24	PHROG	phrog_29211	NA	unknown function
UHGV-1512725_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1512725_25	UniRef90	UniRef90_UPI001958AD70	minor capsid protein	NA
UHGV-1512725_25	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-1512725_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1512725_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1512725_25	Structural annotation	PF06152	NA	NA
UHGV-1512725_27	KOfam	K09961	NA	NA
UHGV-1512725_27	PHROG	phrog_146	portal protein	head and packaging
UHGV-1512725_27	UniRef90	UniRef90_G9YWD9	Phage-associated protein, HI1409 family	NA
UHGV-1512725_27	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-1512725_27	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1512725_27	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-1512725_27	COG	COG3567	NA	NA
UHGV-1512725_27	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1512725_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1512725_28	PHROG	phrog_10250	NA	unknown function
UHGV-1512725_28	UniRef90	UniRef90_A0A096DBF3	PBSX family phage terminase, large subunit	NA
UHGV-1512725_28	eggNOG-mapper	742738.HMPREF9460_02505	Terminase-like family	NA
UHGV-1512725_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1512725_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1512725_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1512725_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1512725_29	PHROG	phrog_2412	NA	unknown function
UHGV-1512725_29	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1512725_31	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-1512725_31	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1512725_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1512725_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1512725_34	PHROG	phrog_2717	NA	unknown function
UHGV-1512725_34	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-1512725_36	PHROG	phrog_8684	NA	unknown function
UHGV-1512725_36	UniRef90	UniRef90_A0A810QGV2	YopX domain-containing protein	NA
UHGV-1512725_36	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-1512725_36	Pfam	PF09643	YopX protein	YopX
UHGV-1512725_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1512725_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1512725_41	PHROG	phrog_22543	NA	unknown function
UHGV-1512725_44	PHROG	phrog_28782	NA	unknown function
UHGV-1512725_44	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-1512725_44	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-1512725_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1512725_45	PHROG	phrog_7704	NA	unknown function
UHGV-1512725_45	Pfam	PF04448	NA	DUF551
UHGV-1512725_45	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1512725_46	PHROG	phrog_36365	NA	unknown function
UHGV-1512725_46	eggNOG-mapper	476272.RUMHYD_01925	NA	NA
UHGV-1512725_48	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1512725_48	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1512725_48	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1512725_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1512725_49	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1512725_49	UniRef90	UniRef90_A0A1C6D624	Cytosine-specific methyltransferase	NA
UHGV-1512725_49	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1512725_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1512725_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1512725_49	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1512725_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1512725_49	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1512725_50	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1512725_50	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1512725_50	UniRef90	UniRef90_A0A1C5N534	Endodeoxyribonuclease RusA	NA
UHGV-1512725_50	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1512725_50	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1512725_50	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1512725_51	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1512725_51	UniRef90	UniRef90_A0A6M3IY07	NA	NA
UHGV-1512725_51	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-1512725_51	Pfam	PF19808	NA	DUF6291
UHGV-1512725_51	Structural annotation	PF19808	NA	NA
UHGV-1512725_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1512725_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1512725_52	UniRef90	UniRef90_A0A1C5WP30	Single-stranded DNA-binding protein	NA
UHGV-1512725_52	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1512725_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1512725_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1512725_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1512725_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1512725_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1512725_53	PHROG	phrog_4973	NA	unknown function
UHGV-1512725_53	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-1512725_53	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1512725_53	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1512725_53	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1512725_54	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1512725_54	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-1512725_54	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-1512725_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1512725_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1512725_55	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-1512725_55	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1512725_55	Structural annotation	PF05772	NA	NA
UHGV-1512725_56	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1512725_56	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-1512725_56	eggNOG-mapper	1134413.ANNK01000120_gene2068	ERF superfamily	NA
UHGV-1512725_56	Pfam	PF04404	ERF superfamily	ERF
UHGV-1512725_56	Structural annotation	PF04404, COG4712	NA	NA