UHGV-1513549

Genome information

Genome length 41,329 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1513549
vOTU ID	vOTU-064919
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0354623
BioSample	SAMEA2738060
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	82.7
Jumbo phage	No

Genome content
Genome length	41,329 bps
GC content	41.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.35%
Average CDS length	758.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1513549_1	PHROG	phrog_18860	NA	unknown function
UHGV-1513549_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1513549_2	PHROG	phrog_435	endolysin	lysis
UHGV-1513549_2	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-1513549_2	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1513549_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1513549_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1513549_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1513549_3	PHROG	phrog_27828	NA	unknown function
UHGV-1513549_3	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-1513549_3	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-1513549_4	eggNOG-mapper	546273.VEIDISOL_00737	NA	NA
UHGV-1513549_5	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-1513549_5	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1513549_5	UniRef90	UniRef90_C4FPB2	Collagen triple helix repeat protein	NA
UHGV-1513549_5	eggNOG-mapper	546273.VEIDISOL_00736	cell adhesion	NA
UHGV-1513549_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1513549_5	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1513549_6	Structural annotation	PF21146, NF041425, COG5513	NA	NA
UHGV-1513549_8	Structural annotation	PF21611	NA	NA
UHGV-1513549_9	KOfam	K14059	int; integrase	NA
UHGV-1513549_9	PHROG	phrog_1	integrase	integration and excision
UHGV-1513549_9	UniRef90	UniRef90_UPI00189C24A4	site-specific integrase	NA
UHGV-1513549_9	eggNOG-mapper	546273.VEIDISOL_00732	Belongs to the 'phage' integrase family	NA
UHGV-1513549_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1513549_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1513549_9	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1513549_9	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1513549_10	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1513549_10	UniRef90	UniRef90_UPI001D0A4391	phage tail protein	NA
UHGV-1513549_10	eggNOG-mapper	546273.VEIDISOL_00731	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1513549_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1513549_10	Structural annotation	PF12571	NA	NA
UHGV-1513549_11	PHROG	phrog_521	tail protein	tail
UHGV-1513549_11	UniRef90	UniRef90_UPI00195FB416	NA	NA
UHGV-1513549_11	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-1513549_11	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1513549_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1513549_11	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1513549_12	PHROG	phrog_6	baseplate protein	tail
UHGV-1513549_12	UniRef90	UniRef90_A0A2S7ZHL0	Baseplate_J domain-containing protein	NA
UHGV-1513549_12	eggNOG-mapper	546273.VEIDISOL_00729	Baseplate J-like protein	NA
UHGV-1513549_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1513549_12	COG	COG3299	NA	NA
UHGV-1513549_12	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1513549_13	PHROG	phrog_120	baseplate protein	tail
UHGV-1513549_13	UniRef90	UniRef90_UPI001960E59F	NA	NA
UHGV-1513549_13	eggNOG-mapper	546273.VEIDISOL_00728	NA	NA
UHGV-1513549_13	Pfam	PF10934	NA	DUF2634
UHGV-1513549_13	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1513549_13	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1513549_14	PHROG	phrog_579	NA	unknown function
UHGV-1513549_14	UniRef90	UniRef90_UPI0019614343	NA	NA
UHGV-1513549_14	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-1513549_14	Pfam	PF10844	NA	DUF2577
UHGV-1513549_14	Structural annotation	PF10844	NA	NA
UHGV-1513549_15	PHROG	phrog_400	tail protein	tail
UHGV-1513549_15	UniRef90	UniRef90_U7UPQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-1513549_15	eggNOG-mapper	546273.VEIDISOL_00726	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1513549_15	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1513549_15	Structural annotation	PF14594, PF05382, NF033848, COG4379	NA	NA
UHGV-1513549_16	PHROG	phrog_380	endolysin	lysis
UHGV-1513549_16	UniRef90	UniRef90_C4FPA1	LysM domain-containing protein	NA
UHGV-1513549_16	eggNOG-mapper	546273.VEIDISOL_00725	PFAM LysM domain	NA
UHGV-1513549_16	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1513549_16	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1513549_17	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1513549_17	UniRef90	UniRef90_A0A2S7ZHD8	TMP_3 domain-containing protein	NA
UHGV-1513549_17	eggNOG-mapper	546273.VEIDISOL_00724	tape measure	NA
UHGV-1513549_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1513549_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1513549_17	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1513549_17	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1513549_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1513549_18	UniRef90	UniRef90_C4FP98	Phage XkdN-like protein	NA
UHGV-1513549_18	eggNOG-mapper	546273.VEIDISOL_00722	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1513549_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1513549_18	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1513549_19	PHROG	phrog_365	tail protein	tail
UHGV-1513549_19	UniRef90	UniRef90_C4FP97	Putative core tail protein	NA
UHGV-1513549_19	eggNOG-mapper	546273.VEIDISOL_00721	Phage tail tube protein	NA
UHGV-1513549_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1513549_19	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1513549_20	PHROG	phrog_279	tail sheath	tail
UHGV-1513549_20	UniRef90	UniRef90_UPI000F8CA736	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1513549_20	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-1513549_20	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1513549_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1513549_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1513549_20	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1513549_21	PHROG	phrog_966	NA	unknown function
UHGV-1513549_22	PHROG	phrog_525	NA	unknown function
UHGV-1513549_22	UniRef90	UniRef90_A0A841R2B4	Ribosomal protein L39E	NA
UHGV-1513549_22	eggNOG-mapper	546273.VEIDISOL_01062	NA	NA
UHGV-1513549_22	Pfam	PF20765	NA	DUF6838
UHGV-1513549_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1513549_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1513549_23	UniRef90	UniRef90_A0A496P818	HK97 gp10 family phage protein	NA
UHGV-1513549_23	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1513549_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1513549_23	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1513549_24	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1513549_24	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-1513549_24	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1513549_25	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1513549_25	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-1513549_25	Structural annotation	PF05135	NA	NA
UHGV-1513549_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-1513549_26	UniRef90	UniRef90_A0A496PA36	N4-gp56 family major capsid protein	NA
UHGV-1513549_26	eggNOG-mapper	546273.VEIDISOL_00714	NA	NA
UHGV-1513549_26	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1513549_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1513549_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1513549_27	UniRef90	UniRef90_UPI000F8DD753	phage scaffolding protein	NA
UHGV-1513549_27	eggNOG-mapper	546273.VEIDISOL_00713	Phage minor structural protein GP20	NA
UHGV-1513549_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1513549_27	Structural annotation	PF06810	NA	NA
UHGV-1513549_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1513549_28	UniRef90	UniRef90_C4FP88	Phage protein F-like protein	NA
UHGV-1513549_28	eggNOG-mapper	546273.VEIDISOL_00712	Phage Mu protein F like protein	NA
UHGV-1513549_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1513549_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1513549_28	COG	COG2369	NA	NA
UHGV-1513549_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1513549_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1513549_29	UniRef90	UniRef90_C4FP87	Phage portal protein, SPP1 Gp6-like protein	NA
UHGV-1513549_29	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1513549_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1513549_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1513549_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1513549_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1513549_30	UniRef90	UniRef90_C4FP86	Phage terminase, large subunit, PBSX family	NA
UHGV-1513549_30	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-1513549_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1513549_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1513549_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1513549_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1513549_30	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1513549_30	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1513549_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1513549_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1513549_31	UniRef90	UniRef90_C4FP85	Terminase small subunit	NA
UHGV-1513549_31	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-1513549_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1513549_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1513549_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1513549_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1513549_32	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-1513549_32	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-1513549_32	Pfam	PF07374	NA	DUF1492
UHGV-1513549_32	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1513549_33	PHROG	phrog_4897	kinase	other
UHGV-1513549_33	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-1513549_33	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-1513549_33	Pfam	PF11753	NA	DUF3310
UHGV-1513549_33	Structural annotation	PF11753	NA	NA
UHGV-1513549_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1513549_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1513549_34	UniRef90	UniRef90_A0A2S7ZHG7	DEAD/DEAH box helicase	NA
UHGV-1513549_34	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-1513549_34	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1513549_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1513549_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1513549_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1513549_34	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1513549_35	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1513549_35	UniRef90	UniRef90_C4FP80	Virulence-associated protein E	NA
UHGV-1513549_35	eggNOG-mapper	546273.VEIDISOL_00704	Virulence-associated protein E	NA
UHGV-1513549_35	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1513549_35	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1513549_35	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1513549_36	PHROG	phrog_16315	NA	unknown function
UHGV-1513549_36	UniRef90	UniRef90_UPI0014028745	PcfJ domain-containing protein	NA
UHGV-1513549_36	eggNOG-mapper	546273.VEIDISOL_00703	PcfJ-like protein	NA
UHGV-1513549_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1513549_36	Structural annotation	PF14284	NA	NA
UHGV-1513549_38	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1513549_38	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1513549_38	UniRef90	UniRef90_A0A3A6W420	POLAc domain-containing protein	NA
UHGV-1513549_38	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-1513549_38	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1513549_38	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1513549_38	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1513549_39	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1513549_39	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-1513549_39	eggNOG-mapper	546273.VEIDISOL_00700	NA	NA
UHGV-1513549_39	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1513549_39	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1513549_40	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-1513549_40	UniRef90	UniRef90_C4FP75	Hep/Hag repeat protein	NA
UHGV-1513549_40	eggNOG-mapper	546273.VEIDISOL_00699	Hep Hag repeat protein	NA
UHGV-1513549_40	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-1513549_40	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-1513549_40	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-1513549_40	COG	COG5295	Autotransporter adhesin	NA
UHGV-1513549_40	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-1513549_41	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1513549_41	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-1513549_41	eggNOG-mapper	546273.VEIDISOL_00698	NA	NA
UHGV-1513549_41	Pfam	PF10926	NA	DUF2800
UHGV-1513549_41	COG	COG2887	RecB family exonuclease	NA
UHGV-1513549_41	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1513549_43	Structural annotation	NF008912	NA	NA
UHGV-1513549_44	UniRef90	UniRef90_A0A2S7ZHK6	DNA-binding protein	NA
UHGV-1513549_44	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-1513549_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1513549_44	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1513549_45	UniRef90	UniRef90_C4FP70	HTH cro/C1-type domain-containing protein	NA
UHGV-1513549_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1513549_45	Structural annotation	PF13443, MF_00535, TIGR03070, COG1813	NA	NA
UHGV-1513549_46	UniRef90	UniRef90_A0A3A6WKZ5	XRE family transcriptional regulator	NA
UHGV-1513549_46	eggNOG-mapper	1140002.I570_02882	Helix-turn-helix XRE-family like proteins	NA
UHGV-1513549_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1513549_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1513549_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1513549_47	eggNOG-mapper	387344.LVIS_1597	Helix-turn-helix XRE-family like proteins	NA
UHGV-1513549_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1513549_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1513549_49	KOfam	K14059	int; integrase	NA
UHGV-1513549_49	PHROG	phrog_1	integrase	integration and excision
UHGV-1513549_49	UniRef90	UniRef90_C4FP65	Site-specific recombinase, phage integrase family	NA
UHGV-1513549_49	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-1513549_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1513549_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1513549_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1513549_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA