UHGV-1513879

Genome information

Genome length 34,744 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1513879
vOTU ID	vOTU-065044
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0252750
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.66
Jumbo phage	No

Genome content
Genome length	34,744 bps
GC content	41.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.63%
Average CDS length	517.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1513879_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1513879_1	UniRef90	UniRef90_UPI00157039CB	Abi family protein	NA
UHGV-1513879_1	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-1513879_1	PADLOC	AbiD	AbiD	Abi
UHGV-1513879_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1513879_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1513879_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1513879_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1513879_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1513879_3	UniRef90	UniRef90_UPI0015714871	helix-turn-helix domain-containing protein	NA
UHGV-1513879_3	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-1513879_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1513879_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1513879_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1513879_5	UniRef90	UniRef90_UPI00156E0088	helix-turn-helix domain-containing protein	NA
UHGV-1513879_5	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-1513879_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1513879_11	PHROG	phrog_32168	NA	unknown function
UHGV-1513879_11	UniRef90	UniRef90_UPI0015707E77	zinc ribbon domain-containing protein	NA
UHGV-1513879_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1513879_12	UniRef90	UniRef90_UPI00156DCAF3	Lar family restriction alleviation protein	NA
UHGV-1513879_12	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-1513879_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1513879_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1513879_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1513879_13	PHROG	phrog_23707	NA	unknown function
UHGV-1513879_13	UniRef90	UniRef90_UPI00156F2BF7	alanine racemase	NA
UHGV-1513879_13	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-1513879_14	Structural annotation	PF14282	NA	NA
UHGV-1513879_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1513879_17	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-1513879_17	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1513879_19	PHROG	phrog_824	NA	unknown function
UHGV-1513879_19	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-1513879_19	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-1513879_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1513879_20	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-1513879_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1513879_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1513879_21	UniRef90	UniRef90_UPI00156DD98C	ParA family protein	NA
UHGV-1513879_21	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-1513879_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-1513879_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1513879_21	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1513879_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1513879_23	PHROG	phrog_15982	NA	unknown function
UHGV-1513879_23	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-1513879_23	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-1513879_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1513879_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1513879_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1513879_25	PHROG	phrog_6568	NA	unknown function
UHGV-1513879_26	PHROG	phrog_11237	NA	unknown function
UHGV-1513879_26	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-1513879_28	UniRef90	UniRef90_UPI00156EF43B	chemotaxis protein	NA
UHGV-1513879_28	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-1513879_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-1513879_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1513879_31	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-1513879_31	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-1513879_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1513879_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1513879_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1513879_32	UniRef90	UniRef90_UPI00156EA6D8	terminase large subunit	NA
UHGV-1513879_32	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-1513879_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1513879_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1513879_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1513879_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1513879_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-1513879_33	UniRef90	UniRef90_UPI00156EE6C1	phage portal protein	NA
UHGV-1513879_33	eggNOG-mapper	1220589.CD32_01735	portal protein	NA
UHGV-1513879_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1513879_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1513879_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1513879_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1513879_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1513879_34	UniRef90	UniRef90_UPI00156DC26F	Clp protease ClpP	NA
UHGV-1513879_34	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1513879_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1513879_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1513879_34	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1513879_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-1513879_35	UniRef90	UniRef90_UPI00156ED36D	phage major capsid protein	NA
UHGV-1513879_35	eggNOG-mapper	1121866.AUGK01000006_gene880	Phage capsid family	NA
UHGV-1513879_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1513879_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1513879_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1513879_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1513879_36	PHROG	phrog_749	NA	unknown function
UHGV-1513879_36	UniRef90	UniRef90_A0A6M5CBT4	Putative head-tail connector protein	NA
UHGV-1513879_36	Structural annotation	PF05135	NA	NA
UHGV-1513879_37	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1513879_37	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1513879_37	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-1513879_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1513879_38	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1513879_39	PHROG	phrog_5509	neck protein	connector
UHGV-1513879_39	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-1513879_39	Structural annotation	TIGR01725	NA	NA
UHGV-1513879_40	UniRef90	UniRef90_UPI00156FB996	phage tail protein	NA
UHGV-1513879_40	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-1513879_40	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1513879_41	UniRef90	UniRef90_UPI00156FCD6F	SAP domain-containing protein	NA
UHGV-1513879_41	Pfam	PF02037	SAP domain	SAP
UHGV-1513879_41	Structural annotation	PF02037	NA	NA
UHGV-1513879_44	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1513879_44	UniRef90	UniRef90_UPI0015701281	phage tail tape measure protein	NA
UHGV-1513879_44	eggNOG-mapper	1336234.JAGN01000004_gene517	Phage-related minor tail protein	NA
UHGV-1513879_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1513879_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1513879_44	COG	COG5283	Phage-related tail protein	NA
UHGV-1513879_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1513879_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1513879_45	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-1513879_45	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-1513879_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1513879_46	PHROG	phrog_538	minor tail protein	tail
UHGV-1513879_46	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1513879_46	eggNOG-mapper	411461.DORFOR_01177	NA	NA
UHGV-1513879_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1513879_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1513879_47	PHROG	phrog_13141	NA	unknown function
UHGV-1513879_47	UniRef90	UniRef90_UPI00156D68EE	H-type lectin domain-containing protein	NA
UHGV-1513879_47	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-1513879_47	Structural annotation	PF20747	NA	NA
UHGV-1513879_48	PHROG	phrog_12931	NA	unknown function
UHGV-1513879_48	eggNOG-mapper	411462.DORLON_00773	NA	NA
UHGV-1513879_49	PHROG	phrog_19695	NA	unknown function
UHGV-1513879_49	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-1513879_49	Structural annotation	PF19714	NA	NA
UHGV-1513879_50	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-1513879_50	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1513879_51	UniRef90	UniRef90_A0A2V2D4A1	XkdX family protein	NA
UHGV-1513879_51	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1513879_51	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1513879_51	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1513879_52	PHROG	phrog_15594	NA	unknown function
UHGV-1513879_52	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-1513879_52	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1513879_54	PHROG	phrog_13589	NA	unknown function
UHGV-1513879_54	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1513879_55	PHROG	phrog_13589	NA	unknown function
UHGV-1513879_55	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-1513879_58	PHROG	phrog_28526	NA	unknown function
UHGV-1513879_58	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-1513879_58	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-1513879_58	Pfam	PF04255	NA	DUF433
UHGV-1513879_59	PHROG	phrog_4105	NA	unknown function
UHGV-1513879_59	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1513879_60	PHROG	phrog_443	holin	lysis
UHGV-1513879_60	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-1513879_60	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-1513879_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1513879_60	Structural annotation	PF16945	NA	NA
UHGV-1513879_61	UniRef90	UniRef90_A0A6L9H0E8	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-1513879_61	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1513879_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA