UHGV-1514743

Genome information

Genome length 38,391 bps

CDS count 51

Completeness 86.64% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1514743
vOTU ID	vOTU-029584
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0271942
BioSample	SAMEA2737772
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.44
Jumbo phage	No

Genome content
Genome length	38,391 bps
GC content	49.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.59%
Average CDS length	707.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1514743_1	UniRef90	UniRef90_A0A5B3FNV2	KTSC domain-containing protein	NA
UHGV-1514743_1	Structural annotation	PF13619	NA	NA
UHGV-1514743_2	PHROG	phrog_2164	NA	unknown function
UHGV-1514743_2	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-1514743_3	eggNOG-mapper	469610.HMPREF0189_01154	NA	NA
UHGV-1514743_4	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-1514743_5	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-1514743_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1514743_10	UniRef90	UniRef90_B6CXH7	Gp157	NA
UHGV-1514743_10	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-1514743_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1514743_10	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1514743_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1514743_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1514743_11	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-1514743_11	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1514743_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1514743_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1514743_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1514743_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1514743_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1514743_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1514743_12	UniRef90	UniRef90_A0A6J5P0M3	Essential recombination function protein	NA
UHGV-1514743_12	eggNOG-mapper	1207076.ALAT01000105_gene1941	ERF superfamily	NA
UHGV-1514743_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-1514743_12	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1514743_16	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-1514743_18	PHROG	phrog_5018	NA	unknown function
UHGV-1514743_18	UniRef90	UniRef90_UPI0012BB7DC3	group I intron-associated PD-(D/E)XK endonuclease	NA
UHGV-1514743_18	Pfam	PF11645	PD-(D/E)XK endonuclease	PDDEXK_5
UHGV-1514743_19	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1514743_19	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1514743_19	UniRef90	UniRef90_UPI001563F13C	S24 family peptidase	NA
UHGV-1514743_19	eggNOG-mapper	469610.HMPREF0189_01170	Peptidase S24-like	NA
UHGV-1514743_19	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1514743_19	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1514743_19	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1514743_20	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1514743_20	UniRef90	UniRef90_UPI001C3EDC4A	helix-turn-helix domain-containing protein	NA
UHGV-1514743_20	eggNOG-mapper	557598.LHK_01505	NA	NA
UHGV-1514743_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1514743_20	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-1514743_24	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-1514743_27	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1514743_27	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1514743_28	Structural annotation	PF04218	NA	NA
UHGV-1514743_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1514743_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1514743_29	UniRef90	UniRef90_UPI0012BCC981	terminase small subunit	NA
UHGV-1514743_29	eggNOG-mapper	1095747.HMPREF1049_1836	Terminase small subunit	NA
UHGV-1514743_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1514743_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1514743_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1514743_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1514743_30	PHROG	phrog_5902	NA	unknown function
UHGV-1514743_30	UniRef90	UniRef90_UPI0012BCF9F6	terminase	NA
UHGV-1514743_30	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-1514743_30	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1514743_30	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1514743_31	UniRef90	UniRef90_UPI0012BC2332	GNAT family N-acetyltransferase	NA
UHGV-1514743_31	eggNOG-mapper	1072685.IX83_07115	Acetyltransferase (GNAT) family	NA
UHGV-1514743_31	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1514743_31	COG	COG3375	Predicted acetyltransferase, GNAT superfamily	NA
UHGV-1514743_32	Pfam	PF05680	ATP synthase E chain	ATP-synt_E
UHGV-1514743_33	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1514743_33	UniRef90	UniRef90_UPI0012BC467D	portal protein	NA
UHGV-1514743_33	eggNOG-mapper	194699.PORTL_BPBPP	Bacteriophage head to tail connecting protein	NA
UHGV-1514743_33	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1514743_33	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1514743_34	PHROG	phrog_528	NA	unknown function
UHGV-1514743_35	PHROG	phrog_458	protease	other
UHGV-1514743_35	UniRef90	UniRef90_UPI0013EFD20D	protease	NA
UHGV-1514743_35	eggNOG-mapper	557598.LHK_01541	NA	NA
UHGV-1514743_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-1514743_36	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-1514743_36	eggNOG-mapper	194699.Q775C7_BPBPP	viral capsid	NA
UHGV-1514743_36	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1514743_36	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1514743_37	PHROG	phrog_427	NA	unknown function
UHGV-1514743_37	UniRef90	UniRef90_Q775C8	Bbp16	NA
UHGV-1514743_37	eggNOG-mapper	194699.Q775C8_BPBPP	NA	NA
UHGV-1514743_37	Pfam	PF21190	Bbp16	Bbp16
UHGV-1514743_37	Structural annotation	PF21190, NF033675	NA	NA
UHGV-1514743_38	PHROG	phrog_394	tail protein	tail
UHGV-1514743_38	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-1514743_38	Structural annotation	PF17212	NA	NA
UHGV-1514743_39	PHROG	phrog_376	tail protein	tail
UHGV-1514743_39	UniRef90	UniRef90_A0A6F8VDG3	NA	NA
UHGV-1514743_39	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-1514743_39	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1514743_40	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1514743_40	UniRef90	UniRef90_A0A6F8VD79	NA	NA
UHGV-1514743_40	eggNOG-mapper	557598.LHK_01551	NA	NA
UHGV-1514743_40	Structural annotation	PF07321, COG5034	NA	NA
UHGV-1514743_41	PHROG	phrog_873	endolysin	head and packaging
UHGV-1514743_41	eggNOG-mapper	1380394.JADL01000008_gene3752	NA	NA
UHGV-1514743_41	Structural annotation	MF_04122	NA	NA
UHGV-1514743_42	PHROG	phrog_9880	NA	unknown function
UHGV-1514743_42	eggNOG-mapper	557598.LHK_01554	purine ribonucleoside salvage	NA
UHGV-1514743_42	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1514743_42	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1514743_42	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1514743_42	Structural annotation	PF18763, PF18814	NA	NA
UHGV-1514743_43	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-1514743_43	UniRef90	UniRef90_A0A6P2EJ50	Structural protein	NA
UHGV-1514743_43	eggNOG-mapper	1157708.KB907450_gene5438	NA	NA
UHGV-1514743_44	KOfam	K03988	C1QG; complement C1q subcomponent subunit C	NA
UHGV-1514743_44	PHROG	phrog_1640	tail protein	tail
UHGV-1514743_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1514743_44	Structural annotation	PF03906	NA	NA
UHGV-1514743_45	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1514743_45	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-1514743_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1514743_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1514743_46	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1514743_46	UniRef90	UniRef90_UPI001F4F2EB0	phage tail assembly chaperone	NA
UHGV-1514743_46	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-1514743_46	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1514743_46	Structural annotation	PF16778	NA	NA
UHGV-1514743_47	eggNOG-mapper	469610.HMPREF0189_02346	NA	NA
UHGV-1514743_47	Structural annotation	PF17065	NA	NA
UHGV-1514743_48	PHROG	phrog_199	holin	lysis
UHGV-1514743_48	UniRef90	UniRef90_UPI0012BCAC2D	phage holin family protein	NA
UHGV-1514743_48	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-1514743_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1514743_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1514743_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1514743_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1514743_49	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1514743_49	PHROG	phrog_7	endolysin	lysis
UHGV-1514743_49	UniRef90	UniRef90_A0A5B3FP35	Lysozyme	NA
UHGV-1514743_49	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-1514743_49	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1514743_49	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1514743_49	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1514743_51	UniRef90	UniRef90_A0A2G6YDA5	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-1514743_51	eggNOG-mapper	469610.HMPREF0189_02290	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1514743_51	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1514743_51	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA