UHGV-1515517

Genome information

vOTU vOTU-019166

Genome length 35,871 bps

CDS count 55

Completeness 62.61% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1515517
vOTU ID	vOTU-019166
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0311566
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.7
Jumbo phage	No

Genome content
Genome length	35,871 bps
GC content	36.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	83.55%
Average CDS length	546.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1515517_3	KOfam	K14059	int; integrase	NA
UHGV-1515517_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1515517_3	UniRef90	UniRef90_A0A292SPJ9	Site-specific integrase (Fragment)	NA
UHGV-1515517_3	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-1515517_3	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1515517_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1515517_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1515517_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1515517_3	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1515517_4	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1515517_4	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-1515517_4	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-1515517_4	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1515517_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1515517_4	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-1515517_6	UniRef90	UniRef90_A0A292SPP9	SpoVT-AbrB domain-containing protein	NA
UHGV-1515517_6	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1515517_7	PHROG	phrog_9804	NA	unknown function
UHGV-1515517_7	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-1515517_7	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-1515517_7	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1515517_7	Structural annotation	PF11417	NA	NA
UHGV-1515517_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1515517_9	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-1515517_9	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-1515517_9	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-1515517_11	PHROG	phrog_17284	NA	unknown function
UHGV-1515517_11	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1515517_11	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-1515517_11	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-1515517_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1515517_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1515517_12	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1515517_12	PHROG	phrog_10445	NA	unknown function
UHGV-1515517_12	UniRef90	UniRef90_A0A416G2C8	AAA_23 domain-containing protein	NA
UHGV-1515517_12	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1515517_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-1515517_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1515517_12	Structural annotation	PF13514, NF000823, COG3593	NA	NA
UHGV-1515517_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1515517_14	PHROG	phrog_26861	NA	unknown function
UHGV-1515517_14	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-1515517_14	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-1515517_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1515517_14	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1515517_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1515517_14	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1515517_15	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-1515517_15	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1515517_15	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1515517_16	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1515517_16	PHROG	phrog_14642	endolysin	lysis
UHGV-1515517_16	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-1515517_16	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-1515517_16	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1515517_16	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1515517_16	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1515517_17	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1515517_17	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-1515517_17	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-1515517_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1515517_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1515517_17	COG	COG3617	Prophage antirepressor	NA
UHGV-1515517_17	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1515517_19	PHROG	phrog_32192	NA	unknown function
UHGV-1515517_19	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-1515517_19	eggNOG-mapper	397290.C810_05153	NA	NA
UHGV-1515517_20	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1515517_20	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1515517_20	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-1515517_20	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-1515517_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1515517_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1515517_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1515517_20	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1515517_21	eggNOG-mapper	1234679.BN424_1825	NA	NA
UHGV-1515517_21	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-1515517_22	KOfam	K07273	acm; lysozyme	NA
UHGV-1515517_22	PHROG	phrog_291	endolysin	lysis
UHGV-1515517_22	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-1515517_22	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1515517_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1515517_22	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1515517_22	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-1515517_24	PHROG	phrog_2566	NA	unknown function
UHGV-1515517_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-1515517_25	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-1515517_25	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-1515517_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1515517_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1515517_27	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-1515517_27	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1515517_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1515517_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1515517_28	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-1515517_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1515517_29	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-1515517_29	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-1515517_29	Pfam	PF07374	NA	DUF1492
UHGV-1515517_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1515517_29	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1515517_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1515517_30	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1515517_30	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1515517_30	COG	COG5410	NA	NA
UHGV-1515517_30	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1515517_31	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1515517_31	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-1515517_31	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1515517_32	PHROG	phrog_2316	NA	unknown function
UHGV-1515517_32	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-1515517_32	eggNOG-mapper	1395587.P364_0110505	NA	NA
UHGV-1515517_32	Pfam	PF16475	NA	DUF5052
UHGV-1515517_32	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-1515517_33	PHROG	phrog_1233	NA	unknown function
UHGV-1515517_33	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1515517_33	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1515517_33	Structural annotation	PF13058	NA	NA
UHGV-1515517_34	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1515517_34	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1515517_35	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1515517_35	UniRef90	UniRef90_UPI00148DB0F2	DnaD domain protein	NA
UHGV-1515517_35	eggNOG-mapper	1029718.SFBM_0770	DnaD domain protein	NA
UHGV-1515517_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1515517_35	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-1515517_36	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-1515517_36	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1515517_38	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1515517_38	UniRef90	UniRef90_A0A292SSK6	Cro/Cl family transcriptional regulator	NA
UHGV-1515517_38	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1515517_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1515517_38	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1515517_41	eggNOG-mapper	1235800.C819_00521	NA	NA
UHGV-1515517_41	Structural annotation	PF09392, NF011854	NA	NA
UHGV-1515517_45	PHROG	phrog_1233	NA	unknown function
UHGV-1515517_45	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-1515517_45	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-1515517_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1515517_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1515517_46	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1515517_46	UniRef90	UniRef90_A0A292SST5	AntA domain-containing protein	NA
UHGV-1515517_46	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-1515517_46	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1515517_46	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1515517_46	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1515517_48	UniRef90	UniRef90_A0A292SSH8	CopG family transcriptional regulator	NA
UHGV-1515517_48	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-1515517_48	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-1515517_49	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-1515517_50	PHROG	phrog_20016	NA	unknown function
UHGV-1515517_50	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1515517_50	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1515517_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1515517_51	PHROG	phrog_16490	NA	unknown function
UHGV-1515517_51	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1515517_52	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-1515517_53	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-1515517_53	Structural annotation	NF033819	NA	NA
UHGV-1515517_55	KOfam	K00651	metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]	NA
UHGV-1515517_55	UniRef90	UniRef90_C4Z0T6	Homoserine O-acetyltransferase	NA
UHGV-1515517_55	eggNOG-mapper	515620.EUBELI_01200	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	NA
UHGV-1515517_55	Pfam	PF04204	Homoserine O-succinyltransferase	HTS
UHGV-1515517_55	NCBIFam	TIGR01001.1	homoserine O-succinyltransferase	NA
UHGV-1515517_55	COG	COG1897	Homoserine O-succinyltransferase	NA
UHGV-1515517_55	HAMAP	MF_00295	Homoserine O-succinyltransferase [metAS]	NA
UHGV-1515517_55	Structural annotation	PF04204, MF_00295, TIGR01001, COG1897	NA	NA