UHGV-1515694

Genome information

Genome length 27,449 bps

CDS count 56

Completeness 72.72% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-1515694
vOTU ID	vOTU-035482
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0238406
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.56
Jumbo phage	No

Genome content
Genome length	27,449 bps
GC content	26.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	85.23%
Average CDS length	420.00 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1515694_1	Structural annotation	PF12363	NA	NA
UHGV-1515694_2	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1515694_3	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-1515694_3	Structural annotation	PF05657	NA	NA
UHGV-1515694_5	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1515694_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1515694_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-1515694_8	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-1515694_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1515694_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1515694_9	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-1515694_9	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-1515694_9	Pfam	PF14265	NA	DUF4355
UHGV-1515694_9	Structural annotation	PF14265	NA	NA
UHGV-1515694_13	UniRef90	UniRef90_R5MSH4	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-1515694_13	eggNOG-mapper	665956.HMPREF1032_03615	cell adhesion	NA
UHGV-1515694_13	COG	COG2369	NA	NA
UHGV-1515694_13	Structural annotation	TIGR01641	NA	NA
UHGV-1515694_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-1515694_15	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-1515694_15	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1515694_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1515694_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1515694_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1515694_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1515694_16	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-1515694_16	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-1515694_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1515694_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-1515694_16	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1515694_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1515694_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1515694_17	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-1515694_17	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-1515694_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1515694_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-1515694_17	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-1515694_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1515694_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1515694_18	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-1515694_18	eggNOG-mapper	246194.CHY_1681	terminase, small subunit	NA
UHGV-1515694_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1515694_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1515694_20	PHROG	phrog_1233	NA	unknown function
UHGV-1515694_20	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-1515694_20	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1515694_20	Structural annotation	PF13058	NA	NA
UHGV-1515694_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1515694_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1515694_23	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-1515694_25	PHROG	phrog_6716	NA	unknown function
UHGV-1515694_33	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-1515694_33	UniRef90	UniRef90_A0A0R2A699	N6_Mtase domain-containing protein	NA
UHGV-1515694_33	eggNOG-mapper	146269.A8YQM7_9CAUD	DNA methylation	NA
UHGV-1515694_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1515694_34	KOfam	K14059	int; integrase	NA
UHGV-1515694_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1515694_34	UniRef90	UniRef90_A0A7U9RPP2	Transposase from transposon Tn916	NA
UHGV-1515694_34	eggNOG-mapper	796940.HMPREF9628_00060	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1515694_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1515694_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1515694_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1515694_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1515694_36	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1515694_36	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1515694_36	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1515694_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1515694_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1515694_36	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1515694_37	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-1515694_38	PHROG	phrog_1123	NA	unknown function
UHGV-1515694_38	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-1515694_38	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-1515694_39	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1515694_39	Structural annotation	PF11417	NA	NA
UHGV-1515694_40	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1515694_40	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1515694_40	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-1515694_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1515694_40	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1515694_40	Structural annotation	PF07120, COG3756	NA	NA
UHGV-1515694_41	PHROG	phrog_7566	NA	unknown function
UHGV-1515694_41	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-1515694_42	eggNOG-mapper	626523.GCWU000342_01037	NA	NA
UHGV-1515694_43	PHROG	phrog_11717	NA	unknown function
UHGV-1515694_43	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-1515694_43	Structural annotation	PF06420, COG5055	NA	NA
UHGV-1515694_48	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-1515694_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1515694_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1515694_51	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-1515694_51	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-1515694_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1515694_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1515694_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1515694_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1515694_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1515694_52	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-1515694_52	eggNOG-mapper	632292.Calhy_0360	Helix-turn-helix domain	NA
UHGV-1515694_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1515694_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1515694_52	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1515694_53	PHROG	phrog_87	metallo-protease	other
UHGV-1515694_53	UniRef90	UniRef90_A0A2J6XX50	Peptidase_M78 domain-containing protein	NA
UHGV-1515694_53	eggNOG-mapper	663278.Ethha_2392	NA	NA
UHGV-1515694_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1515694_54	KOfam	K14059	int; integrase	NA
UHGV-1515694_54	PHROG	phrog_1	integrase	integration and excision
UHGV-1515694_54	UniRef90	UniRef90_UPI001E00B77B	site-specific integrase	NA
UHGV-1515694_54	eggNOG-mapper	86416.Clopa_0550	Belongs to the 'phage' integrase family	NA
UHGV-1515694_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1515694_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1515694_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1515694_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1515694_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1515694_56	PHROG	phrog_95	integrase	integration and excision
UHGV-1515694_56	UniRef90	UniRef90_K1SIJ6	Cassette chromosome recombinase B (Fragment)	NA
UHGV-1515694_56	eggNOG-mapper	1356854.N007_18555	Recombinase	NA
UHGV-1515694_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1515694_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-1515694_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1515694_56	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA