UHGV-1515801

Genome information

Genome length 24,051 bps

CDS count 31

Completeness 68.39% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-1515801
vOTU ID	vOTU-018983
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0177686
BioSample	SAMN05414986
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length	24,051 bps
GC content	42.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.61%
Average CDS length	737.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1515801_1	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-1515801_2	PHROG	phrog_15077	NA	unknown function
UHGV-1515801_2	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-1515801_2	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-1515801_2	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1515801_3	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-1515801_4	PHROG	phrog_7566	NA	unknown function
UHGV-1515801_4	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-1515801_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1515801_9	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-1515801_9	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-1515801_9	Pfam	PF07374	NA	DUF1492
UHGV-1515801_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1515801_9	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1515801_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1515801_10	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1515801_10	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-1515801_10	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-1515801_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1515801_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1515801_10	Structural annotation	PF09889, COG4068	NA	NA
UHGV-1515801_11	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1515801_11	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1515801_11	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-1515801_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1515801_11	COG	COG5484	NA	NA
UHGV-1515801_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1515801_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1515801_12	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1515801_12	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1515801_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1515801_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1515801_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1515801_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1515801_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1515801_13	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-1515801_13	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1515801_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1515801_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1515801_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1515801_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1515801_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1515801_14	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1515801_14	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1515801_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1515801_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1515801_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1515801_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1515801_15	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-1515801_15	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1515801_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1515801_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1515801_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1515801_15	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1515801_16	PHROG	phrog_749	NA	unknown function
UHGV-1515801_17	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1515801_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1515801_18	Structural annotation	PF05657	NA	NA
UHGV-1515801_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1515801_19	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1515801_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1515801_19	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1515801_20	PHROG	phrog_88	major tail protein	tail
UHGV-1515801_20	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-1515801_20	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1515801_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1515801_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1515801_22	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1515801_22	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-1515801_22	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-1515801_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1515801_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1515801_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1515801_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1515801_23	UniRef90	UniRef90_D4M599	Phage putative tail component, N-terminal domain	NA
UHGV-1515801_23	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1515801_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1515801_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1515801_24	PHROG	phrog_13289	tail protein	tail
UHGV-1515801_24	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-1515801_24	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1515801_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1515801_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1515801_24	COG	COG4926	Phage-related protein	NA
UHGV-1515801_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1515801_25	PHROG	phrog_14030	NA	unknown function
UHGV-1515801_25	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-1515801_25	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1515801_25	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1515801_25	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1515801_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1515801_25	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1515801_26	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1515801_26	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1515801_28	PHROG	phrog_4105	NA	unknown function
UHGV-1515801_28	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1515801_29	PHROG	phrog_1129	holin	lysis
UHGV-1515801_29	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-1515801_29	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1515801_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1515801_29	Structural annotation	PF16079	NA	NA
UHGV-1515801_30	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-1515801_31	KOfam	K07273	acm; lysozyme	NA
UHGV-1515801_31	PHROG	phrog_291	endolysin	lysis
UHGV-1515801_31	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1515801_31	eggNOG-mapper	556261.HMPREF0240_03784	Glycosyl hydrolase, family 25	NA
UHGV-1515801_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1515801_31	COG	COG1657	Terpene cyclase SqhC	NA
UHGV-1515801_31	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA