UHGV-1516641

Genome information

Genome length 39,545 bps

CDS count 49

Completeness 97.94% (high-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-1516641
vOTU ID	vOTU-013832
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0277227
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.26
Jumbo phage	No

Genome content
Genome length	39,545 bps
GC content	54.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.47%
Average CDS length	732.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1516641_3	PHROG	phrog_443	holin	lysis
UHGV-1516641_3	UniRef90	UniRef90_A0A496MST8	Holin	NA
UHGV-1516641_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1516641_3	Structural annotation	PF16945	NA	NA
UHGV-1516641_4	PHROG	phrog_13480	endolysin	lysis
UHGV-1516641_4	UniRef90	UniRef90_C0E274	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1516641_4	eggNOG-mapper	553207.HMPREF0299_7074	NA	NA
UHGV-1516641_4	Pfam	PF08924	Rv2525c-like, glycoside hydrolase-like domain	Rv2525c_GlyHyd-like
UHGV-1516641_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1516641_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1516641_4	Structural annotation	PF08924, PF01510, MF_04111, MF_00606, NF008758, TIGR01361, COG3023, COG2876	NA	NA
UHGV-1516641_5	PHROG	phrog_32265	NA	unknown function
UHGV-1516641_5	eggNOG-mapper	234621.RER_22480	tail collar domain protein	NA
UHGV-1516641_5	COG	COG4675	Phage tail collar domain	NA
UHGV-1516641_6	PHROG	phrog_12076	NA	unknown function
UHGV-1516641_6	eggNOG-mapper	558173.CDOO_02000	NA	NA
UHGV-1516641_7	PHROG	phrog_352	minor tail protein	tail
UHGV-1516641_7	UniRef90	UniRef90_A0A496MXX7	NA	NA
UHGV-1516641_7	eggNOG-mapper	1224164.B843_01070	NA	NA
UHGV-1516641_7	Pfam	PF10910	NA	DUF2744
UHGV-1516641_8	PHROG	phrog_110	minor tail protein	tail
UHGV-1516641_8	UniRef90	UniRef90_A0A496MXV2	Phage tail protein	NA
UHGV-1516641_8	eggNOG-mapper	1224164.B843_01065	NA	NA
UHGV-1516641_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1516641_9	PHROG	phrog_106	minor tail protein	tail
UHGV-1516641_9	UniRef90	UniRef90_A0A496MYZ1	Phage tail protein	NA
UHGV-1516641_9	eggNOG-mapper	1224164.B843_01060	NA	NA
UHGV-1516641_10	PHROG	phrog_6090	tail length tape measure protein	tail
UHGV-1516641_10	UniRef90	UniRef90_C0E266	SLT domain-containing protein	NA
UHGV-1516641_10	eggNOG-mapper	1224164.B843_01055	Tail protein	NA
UHGV-1516641_10	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1516641_11	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-1516641_11	eggNOG-mapper	1109713.G9FH42_9CAUD	NA	NA
UHGV-1516641_13	PHROG	phrog_476	major tail protein	tail
UHGV-1516641_13	UniRef90	UniRef90_A0A2Z4Q8R5	Major tail protein	NA
UHGV-1516641_13	eggNOG-mapper	28358.Q9MBJ3_9CAUD	NA	NA
UHGV-1516641_14	PHROG	phrog_123	tail terminator	connector
UHGV-1516641_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1516641_15	UniRef90	UniRef90_A0A2Z4QAD8	Head-to-tail connector complex protein	NA
UHGV-1516641_15	eggNOG-mapper	1688.BCUN_0250	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1516641_16	PHROG	phrog_1650	major head protein	head and packaging
UHGV-1516641_16	UniRef90	UniRef90_A0A385UD91	Major capsid protein	NA
UHGV-1516641_16	eggNOG-mapper	1224164.B843_01015	NA	NA
UHGV-1516641_16	Structural annotation	PF05065, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1516641_17	PHROG	phrog_673	head scaffolding protein	head and packaging
UHGV-1516641_17	UniRef90	UniRef90_A0A7U0D8M6	NA	NA
UHGV-1516641_17	Pfam	PF09956	NA	DUF2190
UHGV-1516641_17	Structural annotation	PF09956, COG5471	NA	NA
UHGV-1516641_18	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1516641_18	eggNOG-mapper	566461.SSFG_01015	NA	NA
UHGV-1516641_18	Structural annotation	PF14265	NA	NA
UHGV-1516641_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1516641_19	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1516641_19	UniRef90	UniRef90_UPI0018D2CF6C	phage regulatory protein/antirepressor Ant	NA
UHGV-1516641_19	eggNOG-mapper	645127.ckrop_1634	SOS response	NA
UHGV-1516641_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1516641_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1516641_19	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1516641_19	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-1516641_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1516641_21	UniRef90	UniRef90_A0A0G3H0G1	CdiA_C domain-containing protein	NA
UHGV-1516641_21	eggNOG-mapper	1348662.CARG_02185	NA	NA
UHGV-1516641_21	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1516641_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-1516641_22	UniRef90	UniRef90_A0A496MUR5	Phage portal protein	NA
UHGV-1516641_22	eggNOG-mapper	1224164.B843_00990	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1516641_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1516641_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1516641_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1516641_23	UniRef90	UniRef90_A0A496MT68	Terminase	NA
UHGV-1516641_23	eggNOG-mapper	1224164.B843_00985	Terminase	NA
UHGV-1516641_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1516641_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1516641_24	PHROG	phrog_226	minor tail protein	tail
UHGV-1516641_24	UniRef90	UniRef90_W5XXA9	Gp2	NA
UHGV-1516641_24	eggNOG-mapper	1224164.B843_00980	NA	NA
UHGV-1516641_25	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1516641_25	UniRef90	UniRef90_A0A0K2H1F7	DNA primase	NA
UHGV-1516641_25	eggNOG-mapper	1224164.B843_00975	Phage plasmid primase, P4 family domain protein	NA
UHGV-1516641_25	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1516641_25	Structural annotation	PF09250	NA	NA
UHGV-1516641_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1516641_26	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1516641_26	UniRef90	UniRef90_C0E248	HNH endonuclease domain protein	NA
UHGV-1516641_26	eggNOG-mapper	1029823.AFIE01000054_gene600	HNH endonuclease	NA
UHGV-1516641_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1516641_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1516641_26	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1516641_27	PHROG	phrog_1454	NA	unknown function
UHGV-1516641_27	eggNOG-mapper	697284.ERIC2_c10690	NA	NA
UHGV-1516641_28	PHROG	phrog_12885	NA	unknown function
UHGV-1516641_28	eggNOG-mapper	196164.23492675	NA	NA
UHGV-1516641_28	Structural annotation	NF033787	NA	NA
UHGV-1516641_29	PHROG	phrog_26098	NA	unknown function
UHGV-1516641_29	eggNOG-mapper	698964.CDPW8_0156	HNH endonuclease	NA
UHGV-1516641_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1516641_30	UniRef90	UniRef90_A0A3S0AUY6	4Fe-4S Wbl-type domain-containing protein	NA
UHGV-1516641_30	eggNOG-mapper	1224164.B843_00945	NA	NA
UHGV-1516641_33	PHROG	phrog_26560	NA	unknown function
UHGV-1516641_33	eggNOG-mapper	105420.BBPO01000002_gene7555	NA	NA
UHGV-1516641_35	PHROG	phrog_1454	NA	unknown function
UHGV-1516641_38	UniRef90	UniRef90_C0E236	DNA binding domain, excisionase family	NA
UHGV-1516641_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1516641_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1516641_39	AcrCatalog	cluster_119776	NA	NA
UHGV-1516641_42	UniRef90	UniRef90_UPI0006413A1B	helix-turn-helix domain-containing protein	NA
UHGV-1516641_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1516641_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1516641_43	UniRef90	UniRef90_A0A8F4IM65	Helix-turn-helix domain-containing protein	NA
UHGV-1516641_43	eggNOG-mapper	645127.ckrop_1635	NA	NA
UHGV-1516641_44	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1516641_44	UniRef90	UniRef90_UPI00021418DA	helix-turn-helix transcriptional regulator	NA
UHGV-1516641_44	eggNOG-mapper	196164.23492660	NA	NA
UHGV-1516641_45	PHROG	phrog_87	metallo-protease	other
UHGV-1516641_45	UniRef90	UniRef90_A0A6I8M9D4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1516641_45	eggNOG-mapper	945712.CULC22_01973	IrrE N-terminal-like domain	NA
UHGV-1516641_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1516641_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1516641_46	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1516641_46	UniRef90	UniRef90_A0A838CLJ0	Helix-turn-helix transcriptional regulator	NA
UHGV-1516641_46	eggNOG-mapper	1203632.HMPREF1300_00960	Transcriptional regulator	NA
UHGV-1516641_46	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1516641_47	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1516641_47	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1516641_47	UniRef90	UniRef90_UPI00092BBAF3	DNA adenine methylase	NA
UHGV-1516641_47	eggNOG-mapper	1184607.AUCHE_04_00380	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1516641_47	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-1516641_47	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1516641_47	COG	COG0338	DNA-adenine methylase	NA
UHGV-1516641_47	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-1516641_48	KOfam	K14059	int; integrase	NA
UHGV-1516641_48	PHROG	phrog_1	integrase	integration and excision
UHGV-1516641_48	UniRef90	UniRef90_C0E224	Site-specific recombinase, phage integrase family	NA
UHGV-1516641_48	eggNOG-mapper	196164.23492653	Belongs to the 'phage' integrase family	NA
UHGV-1516641_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1516641_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1516641_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1516641_48	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA