UHGV-1516992

Genome information

Genome length 45,256 bps

CDS count 64

Completeness 97.11% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1516992
vOTU ID	vOTU-065640
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0340663
BioSample	SAMN02334149
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.08
Jumbo phage	No

Genome content
Genome length	45,256 bps
GC content	46.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.21%
Average CDS length	648.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1516992_2	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1516992_2	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1516992_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1516992_8	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-1516992_8	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1516992_8	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1516992_8	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-1516992_11	PHROG	phrog_32732	NA	unknown function
UHGV-1516992_11	UniRef90	UniRef90_UPI0018C475E7	NA	NA
UHGV-1516992_11	eggNOG-mapper	1415774.U728_724	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-1516992_11	dbAPIS	APIS070	NA	NA
UHGV-1516992_12	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-1516992_12	Structural annotation	PF21277	NA	NA
UHGV-1516992_13	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1516992_13	UniRef90	UniRef90_R4K6R4	AP2 domain-containing protein	NA
UHGV-1516992_13	eggNOG-mapper	86416.Clopa_2526	AP2 domain	NA
UHGV-1516992_13	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1516992_13	Structural annotation	PF10729, PF13392	NA	NA
UHGV-1516992_15	PHROG	phrog_4105	NA	unknown function
UHGV-1516992_15	eggNOG-mapper	1120998.AUFC01000030_gene2251	NA	NA
UHGV-1516992_16	eggNOG-mapper	457424.BFAG_02413	NA	NA
UHGV-1516992_16	Structural annotation	PF04892, NF008028, COG5544	NA	NA
UHGV-1516992_17	eggNOG-mapper	443152.MDG893_20534	NA	NA
UHGV-1516992_18	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1516992_18	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1516992_18	UniRef90	UniRef90_A0A0J6WUF3	Reverse transcriptase domain-containing protein	NA
UHGV-1516992_18	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-1516992_18	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1516992_18	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1516992_18	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1516992_19	PHROG	phrog_5302	tail protein	tail
UHGV-1516992_20	PHROG	phrog_1640	tail protein	tail
UHGV-1516992_20	eggNOG-mapper	2754.EH55_08460	NA	NA
UHGV-1516992_21	PHROG	phrog_9880	NA	unknown function
UHGV-1516992_21	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-1516992_21	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-1516992_21	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1516992_22	PHROG	phrog_10475	endolysin	lysis
UHGV-1516992_22	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-1516992_22	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1516992_22	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1516992_23	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1516992_23	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-1516992_23	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-1516992_24	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1516992_24	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-1516992_25	PHROG	phrog_376	tail protein	tail
UHGV-1516992_25	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1516992_25	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-1516992_25	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1516992_25	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1516992_26	PHROG	phrog_394	tail protein	tail
UHGV-1516992_26	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-1516992_26	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-1516992_26	Structural annotation	PF17212	NA	NA
UHGV-1516992_28	PHROG	phrog_427	NA	unknown function
UHGV-1516992_28	Pfam	PF21190	Bbp16	Bbp16
UHGV-1516992_28	Structural annotation	PF21190	NA	NA
UHGV-1516992_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-1516992_29	UniRef90	UniRef90_A0A345BQX7	Major capsid protein	NA
UHGV-1516992_29	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-1516992_29	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1516992_29	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1516992_30	PHROG	phrog_458	protease	other
UHGV-1516992_30	UniRef90	UniRef90_UPI0019E883D9	peptidase	NA
UHGV-1516992_30	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-1516992_31	PHROG	phrog_528	NA	unknown function
UHGV-1516992_31	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-1516992_32	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1516992_32	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-1516992_32	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-1516992_32	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1516992_32	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1516992_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1516992_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1516992_34	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1516992_34	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-1516992_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1516992_34	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1516992_34	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1516992_35	Pfam	PF02178	AT hook motif	AT_hook
UHGV-1516992_36	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-1516992_36	eggNOG-mapper	1050201.KB913034_gene791	NA	NA
UHGV-1516992_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1516992_37	Structural annotation	PF13983	NA	NA
UHGV-1516992_39	PHROG	phrog_15863	NA	unknown function
UHGV-1516992_39	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1516992_39	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1516992_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1516992_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1516992_41	UniRef90	UniRef90_A0A837BTX4	Single-stranded DNA-binding protein	NA
UHGV-1516992_41	eggNOG-mapper	1545701.LACWKB10_1167	Single-strand binding protein family	NA
UHGV-1516992_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1516992_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1516992_41	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1516992_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1516992_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1516992_42	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1516992_42	eggNOG-mapper	146269.A8YQM5_9CAUD	magnesium ion binding	NA
UHGV-1516992_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1516992_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1516992_44	PHROG	phrog_8514	NA	unknown function
UHGV-1516992_51	PHROG	phrog_9804	NA	unknown function
UHGV-1516992_51	UniRef90	UniRef90_A0A847YIN4	Inhibitor_G39P domain-containing protein	NA
UHGV-1516992_51	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-1516992_51	Structural annotation	PF11417	NA	NA
UHGV-1516992_52	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1516992_52	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-1516992_52	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-1516992_52	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1516992_52	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1516992_52	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1516992_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1516992_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1516992_53	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-1516992_53	eggNOG-mapper	218284.CCDN010000001_gene901	RecT family	NA
UHGV-1516992_53	Pfam	PF03837	RecT family	RecT
UHGV-1516992_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1516992_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1516992_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1516992_54	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1516992_54	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-1516992_54	eggNOG-mapper	706434.HMPREF9429_00770	YqaJ viral recombinase family protein	NA
UHGV-1516992_54	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1516992_54	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1516992_54	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1516992_54	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1516992_56	PHROG	phrog_14367	NA	unknown function
UHGV-1516992_56	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-1516992_56	Pfam	PF01476	LysM domain	LysM
UHGV-1516992_56	COG	COG1388	LysM repeat	NA
UHGV-1516992_56	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1516992_57	Structural annotation	NF041909	NA	NA
UHGV-1516992_58	PHROG	phrog_6058	NA	unknown function
UHGV-1516992_58	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-1516992_58	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-1516992_62	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1516992_62	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1516992_62	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-1516992_62	eggNOG-mapper	927704.SELR_14540	DNA-binding helix-turn-helix protein	NA
UHGV-1516992_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1516992_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1516992_64	KOfam	K14059	int; integrase	NA
UHGV-1516992_64	PHROG	phrog_1	integrase	integration and excision
UHGV-1516992_64	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-1516992_64	eggNOG-mapper	1123288.SOV_2c10320	Belongs to the 'phage' integrase family	NA
UHGV-1516992_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1516992_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1516992_64	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA