UHGV-1517048

Genome information

Genome length 65,953 bps

CDS count 62

Completeness 89.07% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1517048
vOTU ID	vOTU-017528
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0346489
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.6
Jumbo phage	No

Genome content
Genome length	65,953 bps
GC content	43.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	88.52%
Average CDS length	944.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1517048_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1517048_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1517048_1	UniRef90	UniRef90_A0A3E5E8Z5	Site-specific integrase	NA
UHGV-1517048_1	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-1517048_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1517048_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1517048_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1517048_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1517048_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1517048_2	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-1517048_2	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-1517048_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1517048_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1517048_3	PHROG	phrog_16858	NA	unknown function
UHGV-1517048_3	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-1517048_3	Structural annotation	PF08587	NA	NA
UHGV-1517048_4	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517048_4	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-1517048_4	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-1517048_4	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1517048_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1517048_4	Structural annotation	PF05766	NA	NA
UHGV-1517048_5	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1517048_5	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1517048_5	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1517048_5	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1517048_5	Pfam	PF00692	dUTPase	dUTPase
UHGV-1517048_5	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1517048_5	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1517048_7	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517048_7	UniRef90	UniRef90_UPI001F3D95EE	NUMOD4 domain-containing protein	NA
UHGV-1517048_7	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-1517048_7	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1517048_7	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1517048_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1517048_7	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1517048_7	Structural annotation	PF04936	NA	NA
UHGV-1517048_8	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1517048_8	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517048_8	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1517048_8	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1517048_8	PADLOC	AAA_15	NA	NA
UHGV-1517048_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-1517048_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1517048_8	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1517048_9	Structural annotation	PF18300, COG5475	NA	NA
UHGV-1517048_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1517048_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1517048_11	UniRef90	UniRef90_A0A646FUA9	Recombinase	NA
UHGV-1517048_11	eggNOG-mapper	449673.BACSTE_02215	RecT family	NA
UHGV-1517048_11	Pfam	PF03837	RecT family	RecT
UHGV-1517048_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1517048_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1517048_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1517048_12	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1517048_12	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1517048_12	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-1517048_12	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1517048_12	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-1517048_13	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-1517048_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1517048_14	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1517048_14	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-1517048_15	Structural annotation	PF20338	NA	NA
UHGV-1517048_21	UniRef90	UniRef90_A0A353E7E9	Fructan hydrolase	NA
UHGV-1517048_21	eggNOG-mapper	457424.BFAG_01596	NA	NA
UHGV-1517048_23	UniRef90	UniRef90_A0A374TAT3	NA	NA
UHGV-1517048_23	Structural annotation	PF16225	NA	NA
UHGV-1517048_24	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-1517048_24	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1517048_25	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1517048_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1517048_26	PHROG	phrog_822	amidase	lysis
UHGV-1517048_26	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1517048_26	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1517048_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1517048_26	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1517048_26	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1517048_27	PHROG	phrog_20732	NA	unknown function
UHGV-1517048_27	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-1517048_27	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1517048_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1517048_29	PHROG	phrog_27246	NA	unknown function
UHGV-1517048_32	PHROG	phrog_32516	NA	unknown function
UHGV-1517048_32	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-1517048_32	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1517048_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1517048_33	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-1517048_33	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1517048_33	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1517048_33	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1517048_36	Structural annotation	PF02368	NA	NA
UHGV-1517048_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-1517048_38	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1517048_38	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1517048_39	PHROG	phrog_22323	NA	unknown function
UHGV-1517048_39	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1517048_40	PHROG	phrog_26635	NA	unknown function
UHGV-1517048_40	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1517048_42	Structural annotation	PF17212	NA	NA
UHGV-1517048_43	Structural annotation	PF17994	NA	NA
UHGV-1517048_44	PHROG	phrog_13518	NA	unknown function
UHGV-1517048_44	eggNOG-mapper	689781.AUJX01000079_gene1389	Arylsulfotransferase (ASST)	NA
UHGV-1517048_44	Structural annotation	PF05935, MF_00933, TIGR03907, COG3391	NA	NA
UHGV-1517048_48	PHROG	phrog_16490	NA	unknown function
UHGV-1517048_48	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1517048_48	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1517048_49	PHROG	phrog_31654	NA	unknown function
UHGV-1517048_49	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1517048_50	PHROG	phrog_28898	NA	unknown function
UHGV-1517048_50	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-1517048_50	Structural annotation	PF10781	NA	NA
UHGV-1517048_52	PHROG	phrog_38431	NA	unknown function
UHGV-1517048_52	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-1517048_52	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-1517048_54	PHROG	phrog_14770	NA	unknown function
UHGV-1517048_54	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-1517048_54	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-1517048_54	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-1517048_54	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-1517048_54	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-1517048_54	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1517048_54	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1517048_57	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-1517048_58	eggNOG-mapper	1122978.AUFP01000004_gene1839	NA	NA
UHGV-1517048_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1517048_59	UniRef90	UniRef90_A0A646FX20	Helix-turn-helix transcriptional regulator	NA
UHGV-1517048_59	eggNOG-mapper	992406.RIA_0236	sequence-specific DNA binding	NA
UHGV-1517048_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1517048_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1517048_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA