UHGV-1517564

Genome information

Genome length 35,539 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1517564
vOTU ID	vOTU-007673
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286310
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.54
Jumbo phage	No

Genome content
Genome length	35,539 bps
GC content	47.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.63%
Average CDS length	670.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1517564_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-1517564_1	PHROG	phrog_1794	amidase	lysis
UHGV-1517564_1	UniRef90	UniRef90_A0A3A9FB95	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1517564_1	eggNOG-mapper	665950.HMPREF1025_01587	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1517564_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1517564_1	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1517564_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1517564_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1517564_1	Structural annotation	PF01510, PF18013, MF_04111, NF008758, COG5632, COG4991	NA	NA
UHGV-1517564_2	eggNOG-mapper	665950.HMPREF1025_01588	NA	NA
UHGV-1517564_3	PHROG	phrog_199	holin	lysis
UHGV-1517564_3	UniRef90	UniRef90_A0A3A9F3N4	Holin	NA
UHGV-1517564_3	eggNOG-mapper	552396.HMPREF0863_00264	Bacteriophage holin family	NA
UHGV-1517564_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1517564_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1517564_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1517564_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1517564_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1517564_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1517564_6	UniRef90	UniRef90_A0A3A9F797	Reverse transcriptase domain-containing protein	NA
UHGV-1517564_6	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1517564_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1517564_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1517564_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1517564_6	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1517564_7	PHROG	phrog_5302	tail protein	tail
UHGV-1517564_7	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-1517564_7	Structural annotation	PF16323, COG3979	NA	NA
UHGV-1517564_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-1517564_8	UniRef90	UniRef90_A0A174XIV6	Phage structural protein	NA
UHGV-1517564_8	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-1517564_8	Structural annotation	PF13620, PF20747	NA	NA
UHGV-1517564_9	PHROG	phrog_538	minor tail protein	tail
UHGV-1517564_9	UniRef90	UniRef90_UPI001D05F61F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1517564_9	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1517564_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1517564_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1517564_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1517564_10	UniRef90	UniRef90_A0A3A9F805	Phage tail family protein	NA
UHGV-1517564_10	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-1517564_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1517564_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1517564_10	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1517564_11	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1517564_11	UniRef90	UniRef90_A0A174WW30	Phage-related protein	NA
UHGV-1517564_11	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-1517564_11	COG	COG5412	Phage-related protein	NA
UHGV-1517564_12	eggNOG-mapper	411468.CLOSCI_00541	NA	NA
UHGV-1517564_13	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-1517564_13	Structural annotation	PF17388	NA	NA
UHGV-1517564_14	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1517564_14	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-1517564_14	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-1517564_15	Structural annotation	PF05657	NA	NA
UHGV-1517564_16	UniRef90	UniRef90_A0A315Y0Y7	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1517564_16	Structural annotation	TIGR01725	NA	NA
UHGV-1517564_17	PHROG	phrog_19734	NA	unknown function
UHGV-1517564_17	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-1517564_17	eggNOG-mapper	1415774.U728_1250	NA	NA
UHGV-1517564_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1517564_18	PHROG	phrog_749	NA	unknown function
UHGV-1517564_18	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1517564_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1517564_19	UniRef90	UniRef90_A0A3A9F833	Phage major capsid protein	NA
UHGV-1517564_19	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-1517564_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1517564_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1517564_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1517564_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1517564_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1517564_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1517564_20	UniRef90	UniRef90_A0A3A9EY08	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1517564_20	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1517564_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1517564_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1517564_20	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-1517564_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1517564_21	UniRef90	UniRef90_A0A3A9F7Z5	Phage portal protein	NA
UHGV-1517564_21	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-1517564_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1517564_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1517564_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1517564_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1517564_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1517564_22	UniRef90	UniRef90_A0A3A9B3I2	Terminase large subunit	NA
UHGV-1517564_22	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-1517564_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1517564_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1517564_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1517564_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1517564_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1517564_23	UniRef90	UniRef90_A0A3A9FB71	RNA polymerase subunit sigma-70	NA
UHGV-1517564_23	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1517564_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1517564_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1517564_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517564_24	UniRef90	UniRef90_A0A3A9EYI3	HNH endonuclease	NA
UHGV-1517564_24	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-1517564_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1517564_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1517564_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1517564_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1517564_25	UniRef90	UniRef90_A0A3A9F3L6	Single-stranded DNA-binding protein	NA
UHGV-1517564_25	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-1517564_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1517564_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1517564_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1517564_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1517564_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1517564_27	Structural annotation	PF08325, COG4900	NA	NA
UHGV-1517564_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1517564_29	PHROG	phrog_15982	NA	unknown function
UHGV-1517564_29	UniRef90	UniRef90_A0A3A9F761	ParB domain-containing protein	NA
UHGV-1517564_29	eggNOG-mapper	411902.CLOBOL_03889	ParB-like nuclease domain	NA
UHGV-1517564_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1517564_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1517564_29	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1517564_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1517564_30	UniRef90	UniRef90_A0A1Y4GXE1	MazG domain-containing protein	NA
UHGV-1517564_30	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-1517564_30	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-1517564_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1517564_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1517564_31	UniRef90	UniRef90_A0A3A9B483	ParA family protein	NA
UHGV-1517564_31	eggNOG-mapper	642492.Clole_0729	AAA domain	NA
UHGV-1517564_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-1517564_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1517564_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1517564_32	PHROG	phrog_824	NA	unknown function
UHGV-1517564_32	UniRef90	UniRef90_A0A3A9F823	VRR-NUC domain-containing protein	NA
UHGV-1517564_32	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1517564_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1517564_32	Structural annotation	PF08774	NA	NA
UHGV-1517564_34	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1517564_34	UniRef90	UniRef90_A0A3A9ASY2	Class I SAM-dependent methyltransferase	NA
UHGV-1517564_34	eggNOG-mapper	641112.ACOK01000119_gene1514	NA	NA
UHGV-1517564_34	Structural annotation	PF13651, MF_02100, TIGR01712, COG0030	NA	NA
UHGV-1517564_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1517564_35	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-1517564_35	Structural annotation	PF21578	NA	NA
UHGV-1517564_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1517564_36	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1517564_36	UniRef90	UniRef90_A0A3A9F3H1	Methyltransferase	NA
UHGV-1517564_36	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-1517564_36	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1517564_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1517564_36	COG	COG0863	DNA modification methylase	NA
UHGV-1517564_38	PHROG	phrog_24368	NA	unknown function
UHGV-1517564_38	eggNOG-mapper	1235792.C808_00071	NA	NA
UHGV-1517564_39	PHROG	phrog_24386	NA	unknown function
UHGV-1517564_39	eggNOG-mapper	742733.HMPREF9469_05055	phosphatase activity	NA
UHGV-1517564_39	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-1517564_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1517564_41	PHROG	phrog_26861	NA	unknown function
UHGV-1517564_41	UniRef90	UniRef90_A0A174WND2	Helix-destabilizing protein	NA
UHGV-1517564_41	eggNOG-mapper	411470.RUMGNA_02043	NA	NA
UHGV-1517564_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1517564_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1517564_41	Structural annotation	PF00436, PF11506, MF_00984, NF004476, COG0629, COG3390	NA	NA
UHGV-1517564_43	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-1517564_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1517564_44	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1517564_44	UniRef90	UniRef90_A0A3A9F815	Methyltransferase	NA
UHGV-1517564_44	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-1517564_44	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1517564_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1517564_44	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1517564_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1517564_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1517564_47	UniRef90	UniRef90_A0A3A9F3F5	Cytosine-specific methyltransferase	NA
UHGV-1517564_47	eggNOG-mapper	397290.C810_00394	C-5 cytosine-specific DNA methylase	NA
UHGV-1517564_47	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1517564_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1517564_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1517564_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1517564_47	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1517564_48	eggNOG-mapper	397290.C810_00391	NA	NA
UHGV-1517564_48	Structural annotation	PF16090	NA	NA
UHGV-1517564_50	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-1517564_50	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1517564_50	UniRef90	UniRef90_A0A3A9F137	Helix-turn-helix domain containing protein	NA
UHGV-1517564_50	eggNOG-mapper	411483.FAEPRAA2165_01868	Helix-turn-helix domain	NA
UHGV-1517564_50	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1517564_50	Structural annotation	PF11427	NA	NA