UHGV-1517905

Genome information

Genome length 44,368 bps

CDS count 74

Completeness 92.68% (high-quality)

geNomad score 0.9662

Prediction confidence Confident

Genome information
Genome ID	UHGV-1517905
vOTU ID	vOTU-011291
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0341738
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9662
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.59
Jumbo phage	No

Genome content
Genome length	44,368 bps
GC content	27.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	90.10%
Average CDS length	544.91 bps
tRNA count	7
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1517905_2	PHROG	phrog_937	hemolysin	other
UHGV-1517905_2	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-1517905_5	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-1517905_6	PHROG	phrog_6616	tail protein	tail
UHGV-1517905_6	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-1517905_6	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-1517905_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1517905_6	Structural annotation	PF05113, TIGR01665, NF041249, COG4379	NA	NA
UHGV-1517905_7	PHROG	phrog_1194	NA	unknown function
UHGV-1517905_7	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1517905_8	Structural annotation	PF06998, MF_00434, NF041193, COG4808	NA	NA
UHGV-1517905_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1517905_9	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-1517905_9	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1517905_9	Structural annotation	PF20155	NA	NA
UHGV-1517905_10	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1517905_11	Pfam	PF16478	NA	DUF5055
UHGV-1517905_11	Structural annotation	PF16478	NA	NA
UHGV-1517905_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1517905_13	Structural annotation	PF08873, COG5003	NA	NA
UHGV-1517905_14	UniRef90	UniRef90_UPI001D096349	HK97 gp10 family phage protein	NA
UHGV-1517905_14	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-1517905_14	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1517905_17	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1517905_18	Structural annotation	PF05135	NA	NA
UHGV-1517905_19	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1517905_19	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-1517905_19	eggNOG-mapper	1203606.HMPREF1526_00325	NA	NA
UHGV-1517905_19	Pfam	PF17236	NA	DUF5309
UHGV-1517905_19	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-1517905_20	Structural annotation	PF14265	NA	NA
UHGV-1517905_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1517905_22	UniRef90	UniRef90_UPI001D06C00B	phage portal protein	NA
UHGV-1517905_22	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1517905_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1517905_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1517905_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1517905_23	UniRef90	UniRef90_UPI00115B4A11	phage terminase large subunit	NA
UHGV-1517905_23	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-1517905_23	COG	COG5410	NA	NA
UHGV-1517905_23	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1517905_24	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-1517905_24	PHROG	phrog_200	lipoprotein	other
UHGV-1517905_24	UniRef90	UniRef90_R6BHX9	PHB domain-containing protein	NA
UHGV-1517905_24	eggNOG-mapper	665956.HMPREF1032_02171	SPFH Band 7 PHB domain protein	NA
UHGV-1517905_24	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1517905_24	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1517905_24	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-1517905_25	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1517905_26	PHROG	phrog_301	secreted protein	other
UHGV-1517905_26	UniRef90	UniRef90_UPI001C64B82F	NA	NA
UHGV-1517905_26	eggNOG-mapper	1277672.M9QX07_9CAUD	NA	NA
UHGV-1517905_26	Structural annotation	PF07509, MF_00720, NF038397, COG3390	NA	NA
UHGV-1517905_28	PHROG	phrog_20735	NA	unknown function
UHGV-1517905_28	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-1517905_28	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-1517905_28	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-1517905_29	Structural annotation	PF01381	NA	NA
UHGV-1517905_30	PHROG	phrog_1818	NA	unknown function
UHGV-1517905_30	UniRef90	UniRef90_UPI000C85802A	HAD domain-containing protein	NA
UHGV-1517905_30	eggNOG-mapper	1349785.BAUG01000003_gene201	phosphoenolpyruvate-dependent sugar phosphotransferase system	NA
UHGV-1517905_30	Pfam	PF18143	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
UHGV-1517905_30	COG	COG1925	HPr or related phosphotransfer protein	NA
UHGV-1517905_30	Structural annotation	PF18143, TIGR01261	NA	NA
UHGV-1517905_31	PHROG	phrog_3502	NA	unknown function
UHGV-1517905_31	UniRef90	UniRef90_A0A7X1ZQR6	Repressor LexA (Fragment)	NA
UHGV-1517905_31	eggNOG-mapper	521460.Athe_2440	domain protein	NA
UHGV-1517905_31	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1517905_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1517905_31	Structural annotation	PF01726, MF_00732, NF006812, COG0640	NA	NA
UHGV-1517905_33	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1517905_33	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1517905_33	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-1517905_33	eggNOG-mapper	1230342.CTM_07021	tRNA-splicing ligase RtcB	NA
UHGV-1517905_33	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1517905_33	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1517905_33	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1517905_35	UniRef90	UniRef90_A0A843FSU3	Nucleotidyltransferase domain-containing protein	NA
UHGV-1517905_35	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-1517905_36	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-1517905_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1517905_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1517905_41	UniRef90	UniRef90_K0Z6R5	Methyltransferase	NA
UHGV-1517905_41	eggNOG-mapper	579137.Metvu_1442	PFAM DNA methylase N-4 N-6 domain protein	NA
UHGV-1517905_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1517905_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1517905_41	COG	COG0863	DNA modification methylase	NA
UHGV-1517905_41	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1517905_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1517905_52	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1517905_52	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1517905_52	UniRef90	UniRef90_A0A3A9IGT8	Recombinase family protein	NA
UHGV-1517905_52	eggNOG-mapper	1235835.C814_02364	Resolvase, N terminal domain	NA
UHGV-1517905_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1517905_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1517905_52	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-1517905_55	Structural annotation	PF16677	NA	NA
UHGV-1517905_59	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517905_59	UniRef90	UniRef90_A0A7C6W8G9	Metallophos domain-containing protein	NA
UHGV-1517905_59	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-1517905_59	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1517905_59	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-1517905_59	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1517905_60	KOfam	K03700	recU; recombination protein U	NA
UHGV-1517905_60	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1517905_60	UniRef90	UniRef90_A0A357X148	Holliday junction resolvase RecU	NA
UHGV-1517905_60	eggNOG-mapper	1391647.AVSV01000003_gene1795	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1517905_60	Pfam	PF03838	Recombination protein U	RecU
UHGV-1517905_60	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1517905_60	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1517905_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1517905_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1517905_64	UniRef90	UniRef90_R5MQA9	Single-stranded DNA-binding protein	NA
UHGV-1517905_64	eggNOG-mapper	335541.Swol_2539	Single-stranded DNA-binding protein	NA
UHGV-1517905_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1517905_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1517905_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1517905_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1517905_64	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1517905_67	PHROG	phrog_6077	NA	unknown function
UHGV-1517905_67	eggNOG-mapper	1395516.PMO01_17415	NA	NA
UHGV-1517905_67	Structural annotation	PF02518, MF_00505, NF003555, COG0326	NA	NA
UHGV-1517905_68	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1517905_68	UniRef90	UniRef90_W4V8L9	NA	NA
UHGV-1517905_68	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-1517905_68	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1517905_68	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-1517905_69	PHROG	phrog_14970	NA	unknown function
UHGV-1517905_69	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-1517905_69	eggNOG-mapper	1128398.Curi_c14240	double-strand break repair protein	NA
UHGV-1517905_69	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1517905_69	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1517905_69	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1517905_73	Structural annotation	PF11417, PF08209	NA	NA
UHGV-1517905_74	PHROG	phrog_15768	NA	unknown function
UHGV-1517905_74	UniRef90	UniRef90_A0A1M6JRF4	Phg_2220_C domain-containing protein	NA
UHGV-1517905_74	eggNOG-mapper	445973.CLOBAR_02331	NA	NA
UHGV-1517905_74	Structural annotation	PF08679, NF010499, COG1846	NA	NA