UHGV-1518007

Genome information

Genome length 22,221 bps

CDS count 32

Completeness 68.48% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518007
vOTU ID	vOTU-023279
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0168590
BioSample	SAMEA2582170
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.54
Jumbo phage	No

Genome content
Genome length	22,221 bps
GC content	48.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	94.08%
Average CDS length	658.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518007_1	eggNOG-mapper	1235835.C814_00836	AAA domain	NA
UHGV-1518007_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1518007_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1518007_2	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1518007_2	UniRef90	UniRef90_A0A0H1RJC3	Nucleoid occlusion protein, noc	NA
UHGV-1518007_2	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-1518007_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1518007_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1518007_3	PHROG	phrog_15982	NA	unknown function
UHGV-1518007_3	UniRef90	UniRef90_A0A1Y4L462	HTH cro/C1-type domain-containing protein	NA
UHGV-1518007_3	eggNOG-mapper	97139.C824_05778	ParB-like nuclease domain	NA
UHGV-1518007_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1518007_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1518007_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1518007_6	UniRef90	UniRef90_UPI001D06A822	single-stranded DNA-binding protein	NA
UHGV-1518007_6	eggNOG-mapper	1203606.HMPREF1526_01328	Single-stranded DNA-binding protein	NA
UHGV-1518007_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1518007_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1518007_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1518007_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1518007_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1518007_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1518007_7	eggNOG-mapper	1203606.HMPREF1526_01330	NA	NA
UHGV-1518007_7	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1518007_8	PHROG	phrog_1066	NA	unknown function
UHGV-1518007_8	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-1518007_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1518007_8	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1518007_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1518007_10	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-1518007_10	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-1518007_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1518007_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1518007_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1518007_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1518007_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-1518007_11	UniRef90	UniRef90_R8W577	HK97 family phage portal protein	NA
UHGV-1518007_11	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-1518007_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1518007_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1518007_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1518007_12	KOfam	K06904	NA	NA
UHGV-1518007_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1518007_12	UniRef90	UniRef90_R8W0D5	HK97 family phage prohead protease	NA
UHGV-1518007_12	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-1518007_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1518007_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1518007_12	COG	COG3740	Phage head maturation protease	NA
UHGV-1518007_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1518007_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1518007_13	UniRef90	UniRef90_R8W0T1	HK97 family phage major capsid protein	NA
UHGV-1518007_13	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-1518007_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1518007_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1518007_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1518007_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1518007_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1518007_14	UniRef90	UniRef90_UPI000F643601	head-tail connector protein	NA
UHGV-1518007_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1518007_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1518007_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1518007_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-1518007_15	UniRef90	UniRef90_UPI0007735836	head-tail adaptor protein	NA
UHGV-1518007_15	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-1518007_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1518007_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1518007_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1518007_16	UniRef90	UniRef90_UPI001C02CC0B	HK97 gp10 family phage protein	NA
UHGV-1518007_16	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1518007_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1518007_17	eggNOG-mapper	1203606.HMPREF1526_01343	NA	NA
UHGV-1518007_17	Pfam	PF20765	NA	DUF6838
UHGV-1518007_18	PHROG	phrog_1480	tail sheath	tail
UHGV-1518007_18	UniRef90	UniRef90_R8W0T6	Phage_sheath_1C domain-containing protein	NA
UHGV-1518007_18	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-1518007_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1518007_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1518007_19	PHROG	phrog_365	tail protein	tail
UHGV-1518007_19	UniRef90	UniRef90_A0A1S8TW34	Phage-like element PBSX protein XkdM	NA
UHGV-1518007_19	eggNOG-mapper	1203606.HMPREF1526_01345	Phage tail tube protein	NA
UHGV-1518007_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1518007_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1518007_20	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1518007_20	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-1518007_20	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-1518007_21	PHROG	phrog_19074	NA	unknown function
UHGV-1518007_21	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1518007_21	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-1518007_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1518007_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1518007_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1518007_21	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1518007_22	PHROG	phrog_5184	NA	unknown function
UHGV-1518007_22	UniRef90	UniRef90_A0A6P1MGG2	Phage portal protein	NA
UHGV-1518007_22	eggNOG-mapper	1203606.HMPREF1526_01349	LysM domain	NA
UHGV-1518007_22	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1518007_22	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-1518007_23	PHROG	phrog_400	tail protein	tail
UHGV-1518007_23	UniRef90	UniRef90_A0A1C6BFH5	Peptidase C51 domain-containing protein	NA
UHGV-1518007_23	eggNOG-mapper	1203606.HMPREF1526_01350	Late control gene D protein	NA
UHGV-1518007_23	COG	COG3500	NA	NA
UHGV-1518007_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1518007_24	UniRef90	UniRef90_UPI001401616C	NA	NA
UHGV-1518007_24	Structural annotation	PF10844	NA	NA
UHGV-1518007_25	PHROG	phrog_120	baseplate protein	tail
UHGV-1518007_25	UniRef90	UniRef90_UPI0013E93CD4	NA	NA
UHGV-1518007_25	eggNOG-mapper	1203606.HMPREF1526_01352	NA	NA
UHGV-1518007_25	Pfam	PF10934	NA	DUF2634
UHGV-1518007_25	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1518007_25	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-1518007_26	PHROG	phrog_6	baseplate protein	tail
UHGV-1518007_26	UniRef90	UniRef90_R8W0F2	Baseplate_J domain-containing protein	NA
UHGV-1518007_26	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-1518007_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1518007_26	COG	COG3299	NA	NA
UHGV-1518007_26	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1518007_27	PHROG	phrog_521	tail protein	tail
UHGV-1518007_27	UniRef90	UniRef90_UPI001C0D836D	NA	NA
UHGV-1518007_27	COG	COG3778	NA	NA
UHGV-1518007_28	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1518007_28	eggNOG-mapper	1203606.HMPREF1526_00342	NA	NA
UHGV-1518007_28	Structural annotation	PF12571	NA	NA
UHGV-1518007_29	KOfam	K06882	NA	NA
UHGV-1518007_29	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1518007_29	UniRef90	UniRef90_UPI0006884E33	fibronectin type III domain-containing protein	NA
UHGV-1518007_29	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-1518007_29	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1518007_29	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1518007_32	UniRef90	UniRef90_A0A6N9Q103	Holin (Fragment)	NA
UHGV-1518007_32	eggNOG-mapper	1203606.HMPREF1526_00345	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-1518007_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1518007_32	COG	COG4824	Phage-related holin (Lysis protein)	NA