UHGV-1518063

Genome information

Genome length 38,108 bps

CDS count 52

Completeness 51.29% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1518063
vOTU ID	vOTU-025650
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0269046
BioSample	SAMN03283283
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.23
Jumbo phage	No

Genome content
Genome length	38,108 bps
GC content	42.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.35%
Average CDS length	664.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1518063_1	PHROG	phrog_16490	NA	unknown function
UHGV-1518063_1	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-1518063_1	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-1518063_4	KOfam	K13730	inlA; internalin A	NA
UHGV-1518063_4	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-1518063_4	Structural annotation	NF033190, COG4886	NA	NA
UHGV-1518063_5	PHROG	phrog_27151	NA	unknown function
UHGV-1518063_5	UniRef90	UniRef90_UPI0013D1DF92	CotH kinase family protein	NA
UHGV-1518063_5	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-1518063_5	Pfam	PF08757	CotH kinase protein	CotH
UHGV-1518063_5	Structural annotation	PF08757, COG5337	NA	NA
UHGV-1518063_6	PHROG	phrog_13518	NA	unknown function
UHGV-1518063_6	Structural annotation	COG5456	NA	NA
UHGV-1518063_7	Structural annotation	PF17994	NA	NA
UHGV-1518063_8	Structural annotation	PF17212	NA	NA
UHGV-1518063_10	PHROG	phrog_26635	NA	unknown function
UHGV-1518063_10	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1518063_11	PHROG	phrog_22323	NA	unknown function
UHGV-1518063_11	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-1518063_12	PHROG	phrog_156	portal protein	head and packaging
UHGV-1518063_12	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-1518063_12	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1518063_14	Structural annotation	PF02368	NA	NA
UHGV-1518063_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1518063_17	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-1518063_17	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1518063_17	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1518063_17	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1518063_18	PHROG	phrog_32516	NA	unknown function
UHGV-1518063_18	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-1518063_18	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1518063_20	PHROG	phrog_27246	NA	unknown function
UHGV-1518063_23	PHROG	phrog_20732	NA	unknown function
UHGV-1518063_23	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-1518063_23	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1518063_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1518063_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1518063_24	PHROG	phrog_822	amidase	lysis
UHGV-1518063_24	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1518063_24	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1518063_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1518063_24	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1518063_24	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1518063_25	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1518063_26	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-1518063_26	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1518063_27	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1518063_27	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-1518063_27	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-1518063_27	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1518063_27	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1518063_27	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1518063_34	Structural annotation	NF037951	NA	NA
UHGV-1518063_36	Structural annotation	PF19716	NA	NA
UHGV-1518063_40	Structural annotation	PF20338	NA	NA
UHGV-1518063_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1518063_41	eggNOG-mapper	629265.PMA4326_09935	NA	NA
UHGV-1518063_41	COG	COG3756	NA	NA
UHGV-1518063_42	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-1518063_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1518063_43	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1518063_43	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1518063_43	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-1518063_43	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1518063_43	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-1518063_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1518063_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1518063_44	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-1518063_44	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-1518063_44	Pfam	PF03837	RecT family	RecT
UHGV-1518063_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1518063_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1518063_44	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1518063_46	Structural annotation	PF18300, COG5475	NA	NA
UHGV-1518063_47	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1518063_47	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1518063_47	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1518063_47	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1518063_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-1518063_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1518063_47	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1518063_49	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1518063_49	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1518063_49	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-1518063_49	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1518063_49	Pfam	PF00692	dUTPase	dUTPase
UHGV-1518063_49	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1518063_49	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1518063_50	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1518063_50	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-1518063_50	eggNOG-mapper	411476.BACOVA_03890	Bacteriophage Lambda NinG protein	NA
UHGV-1518063_50	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1518063_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1518063_50	Structural annotation	PF05766	NA	NA
UHGV-1518063_52	Structural annotation	PF08587	NA	NA